View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19874_high_48 (Length: 210)
Name: NF19874_high_48
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_high_48 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
| [»] scaffold0258 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 20447758 - 20447958
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20447758 |
aacaataattatttataaaagttgagctctatgatgttgtaagaagtcaaatttatctttaattgacactaacttaaatagatcatca-tattttattaa |
20447856 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgtttagagtagtcaagtaataatgtcatatatctatcaatttggggtatgattctaactagcaaaggacatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20447857 |
catcatccctctttcaatcaacaaaattgtttagagtagtaaagtaataatgtaatatatctatcaatttggggtatgattctaactagcaaaggacatg |
20447956 |
T |
|
| Q |
201 |
ta |
202 |
Q |
| |
|
|| |
|
|
| T |
20447957 |
ta |
20447958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 55250612 - 55250464
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
55250612 |
aacaataattatttattaaagttgagctatataaaattttaagaagtcaaatttatctataattgacactaaactaaatagattatcaatattttattaa |
55250513 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
||| |||||||||| || |||||||||||||| ||||||||| ||||| |
|
|
| T |
55250512 |
cattatccctctttgaaccaacaaaattgtttgaagtagtcaaataata |
55250464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 47668905 - 47669046
Alignment:
| Q |
8 |
attatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaacatcatc |
107 |
Q |
| |
|
|||||||||||||||||| |||||| | ||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| |
|
|
| T |
47668905 |
attatttataaaagttgaactctataaagttttaagaaatcaaatttatctataattgacactaaattaaatagattatcaatattttattaacattatc |
47669004 |
T |
|
| Q |
108 |
cctctttcaatcaacaaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
| ||||| || ||||||||||||| |||||||||| ||||| |
|
|
| T |
47669005 |
catctttaaaccaacaaaattgttcggagtagtcaaataata |
47669046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 1101079 - 1101224
Alignment:
| Q |
3 |
caataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaaca |
102 |
Q |
| |
|
||||| |||||| |||||| |||||||||| |||||||||| |||||||||||||| |||||||||| ||||||||| |||||| |||| |||| | |
|
|
| T |
1101079 |
caatagttatttgtaaaagatgagctctattgagttttaagaagacaaatttatctatagttgacactaaactaaatagattatcaat-ttttgttaata |
1101177 |
T |
|
| Q |
103 |
tcatccctctttcaatcaacaaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
| || |||||| || |||| ||||||||| |||||| ||| ||||| |
|
|
| T |
1101178 |
taatatctctttgaaccaactaaattgtttggagtagccaaataata |
1101224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 46964120 - 46964031
Alignment:
| Q |
4 |
aataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatatttt |
95 |
Q |
| |
|
||||||| |||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||| |||||| || ||||||||||| |
|
|
| T |
46964120 |
aataattttttataaaagttgagctcgatggagttttaagaagtcaaatttatccataattgactcta--ctaaataaattatcaatatttt |
46964031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 35466577 - 35466428
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttatt-a |
99 |
Q |
| |
|
||||||||||||| |||||||||| |||||| | || || ||||||||||||| | ||||||||||||| ||||||||| || | ||||||||| | |
|
|
| T |
35466577 |
aacaataattattcataaaagttgtactctataaagttaaaacaagtcaaatttatttctaattgacactaaactaaatagattataagtattttattaa |
35466478 |
T |
|
| Q |
100 |
acatcatccctctttcaatcaacaaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
| |||||| ||||| || ||||||||| |||| | || |||||||||| |
|
|
| T |
35466477 |
aaatcatctttctttaaaccaacaaaatcgtttgaaataatcaagtaata |
35466428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 29857393 - 29857529
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
||||||| ||| |||||||||||||||| || |||| ||||||||| |||||| |||||| ||||||| ||||||||| ||||||||||| || |
|
|
| T |
29857393 |
aacaatagttacttataaaagttgagctttaaagagtttttagaagtcaattttatccataattaacactaaactaaatagattatcaatatttttatag |
29857492 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgtttagagt |
137 |
Q |
| |
|
|||||| || ||| || |||||||||| ||| |||| |
|
|
| T |
29857493 |
aatcatctctgttttaaccaacaaaattatttggagt |
29857529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 7e-48; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 44508214 - 44508342
Alignment:
| Q |
4 |
aataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaacat |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
44508214 |
aataattatttataaaagttgagctctataaagttttaagaagtcaaatttatctataattgacactaaattaaatagattatcaatattttattaacat |
44508313 |
T |
|
| Q |
104 |
catccctctttcaatcaacaaaattgttt |
132 |
Q |
| |
|
||||||||||| || ||| |||||||||| |
|
|
| T |
44508314 |
catccctctttaaaccaataaaattgttt |
44508342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 31067077 - 31067211
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | |||| |||||||||| |||| |||||||||||||| |||||| ||| |||||| |||| ||| |
|
|
| T |
31067077 |
aacaataattatttttaaaagttgagctctaaggagtttttagaagtcaaa--tatccataattgacactaaattaaattgattatcaatgtttttataa |
31067174 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgtttagagt |
137 |
Q |
| |
|
|| ||| || ||| || ||| ||||||||||||||| |
|
|
| T |
31067175 |
tattatctctgttttaaccaataaaattgtttagagt |
31067211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 41336041 - 41335970
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaa |
72 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| |||||| || |||||||||| ||||||||||||||| |
|
|
| T |
41336041 |
aacaataattatgtataaaagttgaactctatgaacttttaacaaatcaaatttatttataattgacactaa |
41335970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 7093655 - 7093553
Alignment:
| Q |
37 |
ttttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaacatcatccctctttcaatcaacaaaattgtttagag |
136 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||| ||||||||| |||| || ||| || | |||||| || ||| || |||||||||||||| ||| |
|
|
| T |
7093655 |
ttttaagaagacaaatttatcaataattgacactaaactaaatagattatcatta-tttcttgatatcatctctgtttgaaccaacaaaattgtttggag |
7093557 |
T |
|
| Q |
137 |
tagt |
140 |
Q |
| |
|
|||| |
|
|
| T |
7093556 |
tagt |
7093553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 39650564 - 39650427
Alignment:
| Q |
12 |
tttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaacatcatccctc |
111 |
Q |
| |
|
|||||||||||||| |||| | | ||||||||||||||||| ||||||||||||| |||| |||||||||| |||||||||||||||| || ||||||| |
|
|
| T |
39650564 |
tttataaaagttgaactctgtaaagttttaagaagtcaaattcatctataattgacgctaaattaaatagattatcaatattttattaatattatccctc |
39650465 |
T |
|
| Q |
112 |
tttcaatcaacaaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
||| || |||||||||||||| |||||| ||||||||| |
|
|
| T |
39650464 |
tttaaaccaacaaaattgtttggagtagccaagtaata |
39650427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 33087858 - 33087988
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
33087858 |
aacaataattatttataaaagttgagctttatgaagttttaagaagtcaa-tttatctataattgacactaaactaaatagattatcaatattttattaa |
33087956 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgttt |
132 |
Q |
| |
|
|||| || ||||| || ||||||||||||| |
|
|
| T |
33087957 |
tatcacccttctttgaactaacaaaattgttt |
33087988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 45483759 - 45483904
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||| ||||| ||||||||| ||| |||||||||| | |
|
|
| T |
45483759 |
aacaataattatttataaaagttgtgctctatgaagttttaag---tcaa-tttatctataattgatactaaactaaatagattatctatattttattga |
45483854 |
T |
|
| Q |
101 |
catcatccctctttcaatcaac-aaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
||||||||||||| || |||| |||||||||| |||||| ||| ||||| |
|
|
| T |
45483855 |
tatcatccctctttaaaccaacaaaaattgtttggagtagccaaataata |
45483904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 28521625 - 28521495
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
||||||| |||| || |||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||| | ||| |
|
|
| T |
28521625 |
aacaatagttatctacaaaaattgagctctatgaaattttaagaagtcaaatttattcataattgatactaaactaaatagattatcaatattattataa |
28521526 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgtt |
131 |
Q |
| |
|
|| ||| |||||| || ||||||||||||| |
|
|
| T |
28521525 |
tattatctctctttaaaccaacaaaattgtt |
28521495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 46091800 - 46091948
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| | | || |||||||||||||||| |||||| ||||||| ||||| ||| ||||||||||| ||| |
|
|
| T |
46091800 |
aacaatagttatttataaatgttgagctctaaggagtatttagaagtcaaatttatccataattaacactaaactaaatggattatcaatatttttataa |
46091899 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
|| ||| | ||| || ||| |||||||||| |||||| ||| ||||| |
|
|
| T |
46091900 |
tattatctatgttttaaccaataaaattgtttggagtagccaaataata |
46091948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 28050724 - 28050835
Alignment:
| Q |
3 |
caataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaaca |
102 |
Q |
| |
|
||||| |||| ||||||||||||| ||||||| |||||||| | ||||||||||||||| |||| ||| ||||||||| ||| ||||||| ||| | |
|
|
| T |
28050724 |
caatagttatctataaaagttgagttctatgaagatttaagaaattaaatttatctataatagacattaaactaaatagattatccatatttttttatta |
28050823 |
T |
|
| Q |
103 |
tcatccctcttt |
114 |
Q |
| |
|
||||| |||||| |
|
|
| T |
28050824 |
tcatctctcttt |
28050835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 26446085 - 26445992
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattt |
94 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| || |||||| | ||||||||| ||||||||||| || |||||| || |||||||||| |
|
|
| T |
26446085 |
aacaataattatttataaaagttgagctttatagagttgtaagaacttaaatttatccataattgacaccaaactaaatatattatcaatattt |
26445992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 28146779 - 28146913
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctat--gatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttatt |
98 |
Q |
| |
|
||||||| |||| ||||||| ||||| ||||| || |||| |||||||||| ||||| |||||||||||||| ||| |||| ||||||||||| || |
|
|
| T |
28146779 |
aacaatagttatctataaaatttgagttctatatgaagttttcagaagtcaaagttatccataattgacactaaactaattagaatatcaatattttttt |
28146878 |
T |
|
| Q |
99 |
aacatcatccctctttcaatc-aacaaaattgttt |
132 |
Q |
| |
|
|| | |||| |||||| || | ||||||||||||| |
|
|
| T |
28146879 |
aagagcatctctctttgaaccaaacaaaattgttt |
28146913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 33828374 - 33828232
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | |||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||||| ||| |
|
|
| T |
33828374 |
aacaatagttatttataaaagttgagctctaaggagtttttagaagtcaaatttatccataattgacactaaactaaatagattatcaatatttttataa |
33828275 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgtttagagtagtcaa |
143 |
Q |
| |
|
|||||| | ||| || |||||||||||||| |||||||||| |
|
|
| T |
33828274 |
tatcatctttattttaaccaacaaaattgtttggagtagtcaa |
33828232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 16366783 - 16366925
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| || |||| | || |||||||||||||||||| ||||||| ||||||||| ||||||||||| ||| |
|
|
| T |
16366783 |
aacaatagttatttataaaagttgagccctaagaagtttttaaaattcaaatttatctataattaacactaaactaaatagattatcaatatttttataa |
16366882 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgtttagagtagtcaa |
143 |
Q |
| |
|
|||||| || ||| || |||||||||||||| |||||||||| |
|
|
| T |
16366883 |
tatcatctctattttaaccaacaaaattgtttggagtagtcaa |
16366925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 42664143 - 42664278
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| ||||||||||||| ||||||||||||||| ||||||||| || | |||||| |||| |
|
|
| T |
42664143 |
aacaataattatttataaaagttgtactctatgaagttttaaaaagtcaaatttatttataattgacactaaactaaatagattataagtatttt-ttaa |
42664241 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgtttagagt |
137 |
Q |
| |
|
|||| | || ||| || |||||||||||||| |||| |
|
|
| T |
42664242 |
aatcaccactttttaaaccaacaaaattgtttggagt |
42664278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 25246963 - 25247102
Alignment:
| Q |
9 |
ttatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaacatcatcc |
108 |
Q |
| |
|
|||||| |||||| |||| |||||| |||||||||| ||||||||||||||||||||||||| |||||| || |||||| |||| |||| || || |
|
|
| T |
25246963 |
ttatttgtaaaagatgagttctatggagttttaagaagacaaatttatctataattgacactaaactaaatatattatcaat-ttttgttaatataatat |
25247061 |
T |
|
| Q |
109 |
ctctttcaatcaacaaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| ||| ||||| |
|
|
| T |
25247062 |
ctctttaaatcaacaaaattgtttggagtagccaaataata |
25247102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 41877586 - 41877437
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatt--tatctataattgacactaacttaaatagatcatcaatattttatt |
98 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| | ||||||||||||||||| ||| |||| |||||| ||| |||||| || || ||||||||||| |
|
|
| T |
41877586 |
aacaataattatttataaaagttgagttttatcaagttttaagaagtcaaatttatatatatacttgacattaaactaaataaattattaatattttatt |
41877487 |
T |
|
| Q |
99 |
aacatcatccctctttcaatcaacaaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
|| ||| || || ||| || |||||||||||||| |||||| ||||||||| |
|
|
| T |
41877486 |
aagatcgtctct-ttttaaccaacaaaattgtttggagtagccaagtaata |
41877437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 10207945 - 10208080
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
||||||||||||||| ||||||| ||| |||||| ||||||||||||||||| |||||||| ||| || |||||| || ||||||||| |||| |
|
|
| T |
10207945 |
aacaataattatttaaaaaagttaagccctatgaagttttaagaagtcaaatt----tataattggcacaaaactaaataaattatcaatatt---ttaa |
10208037 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgtttagagtagtcaa |
143 |
Q |
| |
|
| ||| |||||| || |||||||||||||| |||||||||| |
|
|
| T |
10208038 |
tagtatctctctttaaaccaacaaaattgtttggagtagtcaa |
10208080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 29191088 - 29191236
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
||||||| ||| |||||||||||||||| ||| || |||||| | ||||||||| ||||||||||| || |||||| | |||||||||| || |
|
|
| T |
29191088 |
aacaatagttagttataaaagttgagctttatagagttgtaagaacttaaatttatccataattgacaccaaactaaatatactatcaatatttgtgcaa |
29191187 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
|||||| || ||| || |||||||||||||| |||||| ||| ||||| |
|
|
| T |
29191188 |
tatcatctctttttaaaccaacaaaattgtttggagtaggcaaataata |
29191236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 5697324 - 5697416
Alignment:
| Q |
40 |
taagaagtcaaatttatctataattgacactaacttaaatagatcatca-atattttattaacatcatccctctttcaatcaacaaaattgttt |
132 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||| || |||| || ||||| ||| || || |||||| ||| ||||||||||||| |
|
|
| T |
5697324 |
taagaagtcaaatttatttataattgacactatattaaataaattatcatatttttta-taatattatatctctttgaataaacaaaattgttt |
5697416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 19866037 - 19865891
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||| ||| |||||||||| | |
|
|
| T |
19866037 |
aacaataattatttataaaagttgtgctctatgaagttttaag---tcaaatttatctataattgatactaaactaaatagattatctatattttattga |
19865941 |
T |
|
| Q |
101 |
catcatccctctttcaatcaac-aaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
||||||| ||||| || |||| |||||||||| |||||| ||| ||||| |
|
|
| T |
19865940 |
tatcatccttctttaaaccaacaaaaattgtttggagtagccaaataata |
19865891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 19870938 - 19870792
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||| ||| |||||||||| | |
|
|
| T |
19870938 |
aacaataattatttataaaagttgtgctctatgaagttttaag---tcaaatttatctataattgatactaaactaaatagattatctatattttattga |
19870842 |
T |
|
| Q |
101 |
catcatccctctttcaatcaac-aaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
||||||| ||||| || |||| |||||||||| |||||| ||| ||||| |
|
|
| T |
19870841 |
tatcatccttctttaaaccaacaaaaattgtttggagtagccaaataata |
19870792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 19875839 - 19875693
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||| ||| |||||||||| | |
|
|
| T |
19875839 |
aacaataattatttataaaagttgtgctctatgaagttttaag---tcaaatttatctataattgatactaaactaaatagattatctatattttattga |
19875743 |
T |
|
| Q |
101 |
catcatccctctttcaatcaac-aaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
||||||| ||||| || |||| |||||||||| |||||| ||| ||||| |
|
|
| T |
19875742 |
tatcatccttctttaaaccaacaaaaattgtttggagtagccaaataata |
19875693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 43559794 - 43559646
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| |||||| ||||||||||||| ||||||||||||||| ||| ||||| || | |||||| |||| |
|
|
| T |
43559794 |
aacaataattatttataaaagttgtactttatgaagttttaacaagtcaaatttatttataattgacactaaactaagtagattataagtatttttttaa |
43559695 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
|| ||| |||||| || |||||||||||||| |||||| ||| ||||| |
|
|
| T |
43559694 |
aataatctctctttaaaccaacaaaattgtttggagtagccaaataata |
43559646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 33226622 - 33226704
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagat |
83 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| ||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
33226622 |
aacaataattatttataaaagttgtactctatgaagttttaacaagtcaaatttatttataattgacactaaactaaatagat |
33226704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 45040068 - 45040203
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||| |||||| |||| |||| |
|
|
| T |
45040068 |
aacaatagttatttgtaaaatatgagctctatggagttttaagaagacaaatttatctataattgatactaaactaaatagattatcaat-ttttgttaa |
45040166 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgtttagagt |
137 |
Q |
| |
|
|| || |||||| || |||||||||||||| |||| |
|
|
| T |
45040167 |
tataatatctctttgaaacaacaaaattgtttggagt |
45040203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 18061118 - 18061255
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
||||||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||||| |||||||| ||||||||| || |||||| | |||| |
|
|
| T |
18061118 |
aacaatagttatttataaaatttgagctatatagagttttaagaagtcaaatttattcataatggacactaaactaaatagattattaatattattttaa |
18061217 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgtttagagta |
138 |
Q |
| |
|
| |||| |||||| || |||| ||||||||| ||||| |
|
|
| T |
18061218 |
tagcatctctctttgaaccaaccaaattgtttggagta |
18061255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 29686165 - 29686256
Alignment:
| Q |
37 |
ttttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaacatcatccctctttcaatcaacaaaatt |
128 |
Q |
| |
|
|||| ||||||||| |||||| |||||||||||||| ||||||||| ||||||||||| || |||||| || ||| || |||||||||| |
|
|
| T |
29686165 |
tttttagaagtcaattttatccataattgacactaaaataaatagattatcaatatttttatagtatcatctctgttttaaccaacaaaatt |
29686256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 21017212 - 21017267
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttat |
56 |
Q |
| |
|
||||||| |||||||||||||||||| | |||| |||||||||||||||||||| |
|
|
| T |
21017212 |
aacaatagttatttataaaagttgagatatatggagttttaagaagtcaaatttat |
21017267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 5608621 - 5608571
Alignment:
| Q |
49 |
aaatttatctataattgacactaacttaaatagatcatcaatattttatta |
99 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || ||||||||| ||||| |
|
|
| T |
5608621 |
aaatttatctataattgacactaaactaaatatattatcaatattatatta |
5608571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 47236032 - 47235893
Alignment:
| Q |
9 |
ttatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaacatcatcc |
108 |
Q |
| |
|
|||||| |||||| |||| |||||| |||||||||| ||||||||||||||||||||||||| ||||||||| |||||| |||| |||| || || |
|
|
| T |
47236032 |
ttatttgtaaaagatgagttctatggagttttaagaagacaaatttatctataattgacactaaactaaatagattatcaat-ttttgttaatataatat |
47235934 |
T |
|
| Q |
109 |
ctctttcaatcaacaaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
|||||| ||||||||||||||||| || ||| ||| ||||| |
|
|
| T |
47235933 |
ctctttaaatcaacaaaattgtttggaatagccaaataata |
47235893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 19910264 - 19910119
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
||||||| |||||||||||||||| |||||| | | |||| |||||||||||||||| |||| ||||||| |||||||| ||||||||||| ||| |
|
|
| T |
19910264 |
aacaatagttatttataaaagttgtgctctaaggtgtttttagaagtcaaatttatccataa---acactaaacaaaatagattatcaatatttttataa |
19910168 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
|||||| || ||| || |||||||||||||| |||||| ||| ||||| |
|
|
| T |
19910167 |
tatcatctctgttttaaccaacaaaattgtttggagtagccaaataata |
19910119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 34821131 - 34821225
Alignment:
| Q |
55 |
atctataattgacactaacttaaatagatcatcaatattttattaacatcatccctctttcaatcaacaaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||||||| || ||||||| ||||||||| || |||||||||||||| ||||| |||||||||| |
|
|
| T |
34821131 |
atctataattgacacttaactaaatagattatcaatattatactaacatcgtccctctttaaaccaacaaaattgtttggagtaatcaagtaata |
34821225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 6036918 - 6036788
Alignment:
| Q |
9 |
ttatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaacatcatcc |
108 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||| || ||| || ||| || | ||||||| ||| |||||| |
|
|
| T |
6036918 |
ttatttataaaagttgaactctattgagttttaagaagtaaaatttatccataattgtcattaaatttgatatatttttaatatttgtgtaatatcatct |
6036819 |
T |
|
| Q |
109 |
ctctttcaatcaacaaaattgtttagagtag |
139 |
Q |
| |
|
| |||| || |||||||||||||| |||||| |
|
|
| T |
6036818 |
ccctttgaaccaacaaaattgtttggagtag |
6036788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 16452 - 16586
Alignment:
| Q |
4 |
aataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaata-ttttattaaca |
102 |
Q |
| |
|
|||| |||| ||||||||||||| | ||||| |||||||||||||| ||||||| | |||||| ||||| |||||| || ||||||| |||| |||| | |
|
|
| T |
16452 |
aatagttatctataaaagttgagatgtatga-attttaagaagtcagatttatccacaattgatactaaactaaataaattatcaatattttttttaata |
16550 |
T |
|
| Q |
103 |
tcatccctctttcaatcaacaaaattgtttagagta |
138 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||||| |
|
|
| T |
16551 |
tcatccctctttaaaccaacaaaattgtttggagta |
16586 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 15471076 - 15471205
Alignment:
| Q |
9 |
ttatttataaaagttgagctcta-tgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaacatcatc |
107 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| ||| ||||||||||| |||||||||||||| ||||||||| ||||||||||| || |||||| |
|
|
| T |
15471076 |
ttatttataaaagttgagctctaatgagttttta-gaattcaaatttatccataattgacactaaactaaatagattatcaatatttttgtattatcatc |
15471174 |
T |
|
| Q |
108 |
cctctttcaatcaacaaaattgtttagagta |
138 |
Q |
| |
|
|| ||| || |||||||||||||| ||||| |
|
|
| T |
15471175 |
tctgttttaaccaacaaaattgtttggagta |
15471205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 35951919 - 35952067
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| || |||||| | ||||||||| |||||||||||||| |||||| || |||||||||| | || |
|
|
| T |
35951919 |
aacaatagttatttataaaagttgagctttatagagttgtaagaactaaaatttatccataattgacactaaactaaatatattatcaatatttgttcaa |
35952018 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
|||||| || ||| || |||||||||||||| |||||| ||| ||||| |
|
|
| T |
35952019 |
tatcatctctttttaaaccaacaaaattgtttggagtagccaaataata |
35952067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 29790735 - 29790601
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| |||||| |||||||||||| |||||||||||||| ||||||||| || | ||||| |||| |
|
|
| T |
29790735 |
aacaataattatttataaaagttgtactttatgaagttttaacaagtcaaatttacttataattgacactagactaaatagattataagtattt--ttaa |
29790638 |
T |
|
| Q |
101 |
catcatccctctttcaatcaacaaaattgtttagagt |
137 |
Q |
| |
|
|||||| || ||| || |||||||||||||| |||| |
|
|
| T |
29790637 |
aatcatctctttttaaaccaacaaaattgtttggagt |
29790601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 14144877 - 14145028
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctata---attgacactaacttaaatagatcatcaatattttat |
97 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| | |||| ||| |||||||||||| ||| ||||||||||| ||||||||| ||||||||||| |
|
|
| T |
14144877 |
aacaatacttatttataaaagttaagctctaaggagtttttagaggtcaaatttatccataattattgacactaaactaaatagattatcaatattttta |
14144976 |
T |
|
| Q |
98 |
taacatcatccctctttcaatcaacaaaattgtttagagtagtcaagtaata |
149 |
Q |
| |
|
||| |||||| | ||| || |||||||||| ||| |||| ||||| ||||| |
|
|
| T |
14144977 |
taatatcatctatgttttaaccaacaaaattatttggagtggtcaaataata |
14145028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 33140298 - 33140368
Alignment:
| Q |
1 |
aacaataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacacta |
71 |
Q |
| |
|
||||||| |||||||||||| ||||||| |||| || |||||| | ||||||||| ||||||||||||| |
|
|
| T |
33140298 |
aacaatagttatttataaaatttgagctttatggagttgtaagaacttaaatttatccataattgacacta |
33140368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 270402 - 270311
Alignment:
| Q |
4 |
aataattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatatttt |
95 |
Q |
| |
|
|||| ||||||||||||||||||||||| | |||| | ||||||||||||| ||||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
270402 |
aatagttatttataaaagttgagctctaaggagtttttaaaagtcaaatttatttataattgacactaaactaagtagattatcaatatttt |
270311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 12650 - 12779
Alignment:
| Q |
9 |
ttatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaacatcatcc |
108 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||||| |||||||||| ||| |||||||||| |||||||| |||||| ||||||||| || || |
|
|
| T |
12650 |
ttatttgtaaaaaatgagctctatggagttttaagaagacaaatttatccatacttgacactaaactaaatagaatatcaat-ttttattaatataatat |
12748 |
T |
|
| Q |
109 |
ctctttcaatcaacaaaattgtttagagtag |
139 |
Q |
| |
|
|||||| || |||||||||||||| |||||| |
|
|
| T |
12749 |
ctctttgaaccaacaaaattgtttggagtag |
12779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 4017207 - 4017082
Alignment:
| Q |
7 |
aattatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaacatcat |
106 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| ||||||||||||||| |||||| ||||||| ||||||||| | ||| | || |||| ||||| |
|
|
| T |
4017207 |
aattatttataaaagttgagttctatcgagttttcagaagtcaaatttattcataattaacactaaactaaatagattacaaatgtatttttaatatcat |
4017108 |
T |
|
| Q |
107 |
ccctctttcaatcaacaaaattgttt |
132 |
Q |
| |
|
| ||| || || ||||||||||||| |
|
|
| T |
4017107 |
ctctccttgaactaacaaaattgttt |
4017082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 20921479 - 20921405
Alignment:
| Q |
8 |
attatttataaaagttgagctctatgatattttaagaagtcaaatttatctataattgacactaacttaaatagat |
83 |
Q |
| |
|
||||| |||| ||||||| |||||||| |||||| || |||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
20921479 |
attatgtatagaagttgaactctatgaatttttaaaaa-tcaaatttatttataattgacactaaactaaatagat |
20921405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0258 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0258
Description:
Target: scaffold0258; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 149
Target Start/End: Original strand, 18107 - 18220
Alignment:
| Q |
36 |
attttaagaagtcaaatttatctataattgacactaacttaaatagatcatcaatattttattaacatcatccctctttcaatcaacaaaattgtttaga |
135 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| ||| |||||| || || ||||||| ||| |||||| |||| || |||||||||| ||| || |
|
|
| T |
18107 |
attttaagaagtaaaattcatctataattgacaataaactaaatatattattaatatttgtgtaatatcatcttcctttaaaccaacaaaattatttgga |
18206 |
T |
|
| Q |
136 |
gtagtcaagtaata |
149 |
Q |
| |
|
|||| ||| ||||| |
|
|
| T |
18207 |
gtagacaaataata |
18220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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