View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19874_high_6 (Length: 484)
Name: NF19874_high_6
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Original strand, 39901228 - 39901687
Alignment:
| Q |
8 |
ccaagaatattaagaataattaacaaaagttagctgagatattgaagtttgattaaaaatatatattgaaacttggatgcatgagaaaaagcatggctaa |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39901228 |
ccaaaaatattaagaataattaacaaaagttagctgagatattgaagtttaattaaaaatatatattgaaacttggatgcatgagaaaaagcatggctaa |
39901327 |
T |
|
| Q |
108 |
ttaatttattgtgatatgttacgcaccaattaattgatgatcaattttgctttgtaagtatgactaatttattagatatgttatgcatcagttgatatca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39901328 |
ttaatttattgtgatatgttacgcaccaattaattgatgatcaattttgctttgtaagtatgactaatttattagatatgttatgcaccagttgatatca |
39901427 |
T |
|
| Q |
208 |
ttttggtttattagtttagacgataattaagagcttaggactaaatcgaatgatgttaacagcagcaaaacccttttatacatgtattatcattaagaaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39901428 |
ttttggtttattagtttagacgataattaagagcttaggactaaatcgaatgatgttaacagcagcaaaacccttttatacatgtattatcattaagaaa |
39901527 |
T |
|
| Q |
308 |
gatgtttttattatactatagaagtttaacaaaaaagacaggaaatcatgcatgatggcatattacactttaaaataataataatcacttctctttcatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39901528 |
gatgtttttattatactatagaagtttaacaaaaaagacaggaaatcatgcatgatggcatagtacactaaaaaataataataatcacttctctttcatg |
39901627 |
T |
|
| Q |
408 |
tataggtcggccaaaatctaattaatcaaatgccatatttttatgtatatatttcctttt |
467 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
39901628 |
tataggtcggccaaaatctaattaattaaatgtcatatttttatgtatatatttcctttt |
39901687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University