View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19874_high_9 (Length: 433)
Name: NF19874_high_9
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 37585685 - 37585432
Alignment:
| Q |
11 |
catcatcaatgttaaagatctgtcaatttcctcttgtatcttcccctttatcattttttctaacaggtaagatccagccaggtcctagatgttaaatgtc |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37585685 |
catcctcaatgttaaagatctgtcaatttcctattgtatcttcccctttatcattttttctaacaggtaagatccagccaggtcctagatgttaaatgtc |
37585586 |
T |
|
| Q |
111 |
tttgaattattaagagatttccttttatacttgcatttgttataggttagtggttcgaatctgaggacattttacgtggaattccaatttcgaaggttca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
37585585 |
tttgaattattaagagatttccttttatacttgcatttgttataggttagtagttcgaatctgaggatattttacgtggaattccaatttcgaacgttca |
37585486 |
T |
|
| Q |
211 |
taacattttcccctctgtatttatttgagtatctgtgttttccattaggcccat |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37585485 |
taacattttcccctctgtatttatttgagtatctgtgtttaccattaggcccat |
37585432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 37592800 - 37592680
Alignment:
| Q |
16 |
tcaatgttaaagatctgtcaatttcctcttgtatcttcccctttatcattttttcta-------acaggtaagatccagccaggtcctagatgttaaatg |
108 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || || ||||| ||| ||| |||| ||||||||||| |||| |||||||||||| |
|
|
| T |
37592800 |
tcaatgttaaagatctgccaatttcctcttgtatcctc---ttgatcatgtttgctacagtcttacagataagatccagctaggttctagatgttaaaaa |
37592704 |
T |
|
| Q |
109 |
tctttgaattattaagagatttcc |
132 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
37592703 |
tctttgaattattaagagatttcc |
37592680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 379 - 433
Target Start/End: Original strand, 37461881 - 37461935
Alignment:
| Q |
379 |
tgaagatggaaatcaaagaggatgtggaaggtggtaagcagaaaggaatgagaga |
433 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
37461881 |
tgaagatggatatcaaagaggatgtggaaggtggcaaacagaaaggaataagaga |
37461935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 384 - 433
Target Start/End: Complemental strand, 37592403 - 37592354
Alignment:
| Q |
384 |
atggaaatcaaagaggatgtggaaggtggtaagcagaaaggaatgagaga |
433 |
Q |
| |
|
||||||||||||||||| |||| | |||||||||||||||||||||||| |
|
|
| T |
37592403 |
atggaaatcaaagaggaaatggaggatggtaagcagaaaggaatgagaga |
37592354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 37592638 - 37592591
Alignment:
| Q |
137 |
atacttgcatttgttataggttagtggttcgaatctgaggacatttta |
184 |
Q |
| |
|
|||||||||||||||| | ||||||||||| |||||||| |||||||| |
|
|
| T |
37592638 |
atacttgcatttgttaaatgttagtggttcaaatctgagaacatttta |
37592591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University