View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_13 (Length: 413)
Name: NF19874_low_13
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 15 - 413
Target Start/End: Original strand, 34333269 - 34333667
Alignment:
| Q |
15 |
tgaaggaatatggcgtgagttttccaacggaatgttgtacttgaagcacgggttcgtaaaaacaaacaaatttattagtttgtttatttcatatgaatgt |
114 |
Q |
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| T |
34333269 |
tgaaggaatatggcgtgagttttccaacggaatgttgtacttgaagcacgggttcgtaaaaacaaacaaatttattagtttgtttatttcatatgaatgt |
34333368 |
T |
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| Q |
115 |
tttcaaataaatacttaatttgacatatcttttaattttgtaagnnnnnnnnttggtttgatttgggtctgatgtagactaaatagtaggatcatattcg |
214 |
Q |
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| T |
34333369 |
tttcaaataaatacttaatttgacatatcttttaattttgtaagaaaaaaaattggtttgatttgggtctgatgtagactaaatcgtaggatcatattcg |
34333468 |
T |
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| Q |
215 |
ttggtttattctcacccttactttcatgtactttgaaatttaactcaataagtgattgatgagttagagtggtacatttgatgtatgtgtaaattgattt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34333469 |
ttggtttattctcacccttactttcatgtactttgaaatttaactcaataagtgattgttgagttagagtggtacatttgatgtatgtgtaaattgattt |
34333568 |
T |
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| Q |
315 |
tgaaagaatattctcgtatatacatttgaggtgtcaaggtaacttggtggaaaagttccttgacgctcagagtggatcatcgtcaaattgctcgtgtga |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34333569 |
tgaaagaatattctcgtatatacatttgaggtgtcaaggtaacttggtggaaaagtttcttgacgctcagagtggatcatcgtcaaatttctcgtgtga |
34333667 |
T |
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