View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_16 (Length: 353)
Name: NF19874_low_16
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 3 - 339
Target Start/End: Original strand, 52962891 - 52963229
Alignment:
| Q |
3 |
gaaccccaaccactttaaaaccaaatgccataaccgaccataaacgtcaccccgaaagaacaaatgatataagctaaaatgaccctaaacatattatcgc |
102 |
Q |
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| T |
52962891 |
gaaccccaaccactttgaaaccaaatgccataaccgaccataaacgtcaccccgaaagaacaaatgatataagctaaaatgaccctaaacatattattgc |
52962990 |
T |
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| Q |
103 |
agtaataccataatgtggtaattaatattgtaaaaaacatgcgtgcgaaacttaattgtacagctagtgtat--aattattactagctcttaaaataggc |
200 |
Q |
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| T |
52962991 |
agtaataccataatgtggtaattaatattgtaaaaaacatgcgtgcgaaacttaattgtacaactagtgtataaaattattactagctcttaaaataggc |
52963090 |
T |
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| Q |
201 |
aagtttacttgttaagaatttatccaaaaaccaacactccattataatcgaatccgaagaaagcaattgaaaaagtttgaaagaagaagaacaaaaatga |
300 |
Q |
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| T |
52963091 |
aagtttacttgttaagaatttatccaaaaaccaacactccattataatcgaatccgaagaaaacaattgaaaaagtttgaaagaagaagaacaaaaatga |
52963190 |
T |
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| Q |
301 |
acagctttggcatcatataaagtagagcaatgttatttg |
339 |
Q |
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| T |
52963191 |
acagctttgacatcatataaagtagagcaatgttatttg |
52963229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 42918454 - 42918387
Alignment:
| Q |
3 |
gaaccccaaccactttaaaaccaaatgccataaccgaccataaacgtcaccccgaaagaacaaatgat |
70 |
Q |
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| T |
42918454 |
gaaccccaactactttgaaaccagaggccataaccgaccataaaagtcacactaaaagaacaaatgat |
42918387 |
T |
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