View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_17 (Length: 349)
Name: NF19874_low_17
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 118 - 331
Target Start/End: Complemental strand, 7585799 - 7585586
Alignment:
| Q |
118 |
gaagtgatgtcagttacaagtgttgtgatttgtgaaacaaagaaaaagcaaaacgcaccgtttgaatctttgttgggagtggaaaatgttgtaagtggtg |
217 |
Q |
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| T |
7585799 |
gaagtgatgtcaattacaagtgttgtgatttgtgaaacagagaaaaagcaaaacgcaccgtttgaatctttgttgggagtggaaaatgttgtaagtgatg |
7585700 |
T |
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| Q |
218 |
aaactgggatttgattatgatgcgtattggaatccatgaatctgaaaatgtgataaagaaaattgggtttagggaacagtgatgaatgaaaagcggagaa |
317 |
Q |
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| T |
7585699 |
aaactgggatttgattatgatgcgtattggaatccatgaatctgaaaatgtgataaagaaaattgggtttagggaacagtgatgaatgaaaagcggagaa |
7585600 |
T |
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| Q |
318 |
agaaagagaatttg |
331 |
Q |
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| T |
7585599 |
agaaagagaatttg |
7585586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 7585914 - 7585824
Alignment:
| Q |
1 |
caatcaaagcattggctgcatcttgggtcataggttgcaaatcctttgcattacaaggtacacatgtcttcgtcgaaagatctaaatcaac |
91 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7585914 |
caatcaaagcattggctgcatcttgggtcataggttgcaaatcctttgcattacaaggtacacatgtcttcgtcgaaagatctaaatcaac |
7585824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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