View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19874_low_19 (Length: 325)

Name: NF19874_low_19
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19874_low_19
NF19874_low_19
[»] chr5 (7 HSPs)
chr5 (9-297)||(15591116-15591404)
chr5 (6-156)||(18264931-18265080)
chr5 (1-88)||(1285749-1285836)
chr5 (6-134)||(24956294-24956421)
chr5 (6-134)||(24964754-24964881)
chr5 (105-138)||(16563713-16563746)
chr5 (105-134)||(20639417-20639446)
[»] chr2 (7 HSPs)
chr2 (6-255)||(14105104-14105354)
chr2 (8-129)||(44956999-44957120)
chr2 (111-173)||(13059890-13059952)
chr2 (6-134)||(35139087-35139214)
chr2 (6-134)||(35147423-35147550)
chr2 (6-134)||(15952517-15952644)
chr2 (105-134)||(19883992-19884021)
[»] chr8 (9 HSPs)
chr8 (12-258)||(7146342-7146589)
chr8 (6-255)||(19950339-19950589)
chr8 (6-255)||(19954793-19955042)
chr8 (6-255)||(2470497-2470746)
chr8 (12-156)||(21640587-21640729)
chr8 (6-156)||(4543721-4543869)
chr8 (118-173)||(30779478-30779533)
chr8 (6-134)||(32007215-32007342)
chr8 (1-141)||(34517714-34517854)
[»] chr4 (11 HSPs)
chr4 (6-255)||(16595294-16595543)
chr4 (111-255)||(7216552-7216697)
chr4 (6-218)||(33722270-33722483)
chr4 (6-218)||(20513627-20513839)
chr4 (6-218)||(2574700-2574912)
chr4 (6-218)||(55081064-55081276)
chr4 (12-127)||(12613677-12613792)
chr4 (49-230)||(40684213-40684394)
chr4 (6-151)||(8816970-8817115)
chr4 (112-162)||(10566771-10566821)
chr4 (138-220)||(39991287-39991369)
[»] chr1 (15 HSPs)
chr1 (6-258)||(2493143-2493396)
chr1 (70-247)||(23191355-23191532)
chr1 (6-218)||(36725228-36725440)
chr1 (28-255)||(24159140-24159367)
chr1 (6-218)||(33380291-33380503)
chr1 (6-190)||(12906662-12906846)
chr1 (6-162)||(25661274-25661430)
chr1 (37-216)||(28857425-28857604)
chr1 (165-255)||(25659604-25659694)
chr1 (6-133)||(27761291-27761415)
chr1 (6-146)||(31064476-31064616)
chr1 (6-157)||(19309033-19309184)
chr1 (136-223)||(52024451-52024537)
chr1 (8-133)||(9352758-9352883)
chr1 (70-218)||(32987798-32987945)
[»] chr3 (10 HSPs)
chr3 (70-253)||(4662749-4662932)
chr3 (5-255)||(48431630-48431878)
chr3 (5-230)||(48435238-48435462)
chr3 (12-213)||(16983488-16983689)
chr3 (6-134)||(44362986-44363113)
chr3 (6-133)||(21638018-21638144)
chr3 (6-134)||(14880771-14880898)
chr3 (6-134)||(14892586-14892713)
chr3 (6-134)||(41007051-41007180)
chr3 (105-134)||(11181247-11181276)
[»] chr6 (7 HSPs)
chr6 (70-255)||(35130210-35130394)
chr6 (6-228)||(32814423-32814645)
chr6 (70-228)||(14776127-14776285)
chr6 (6-183)||(28969441-28969618)
chr6 (6-173)||(14042164-14042336)
chr6 (6-132)||(20452106-20452231)
chr6 (105-134)||(22764427-22764456)
[»] scaffold0018 (1 HSPs)
scaffold0018 (37-215)||(171080-171258)
[»] chr7 (4 HSPs)
chr7 (28-218)||(6897764-6897954)
chr7 (49-141)||(25831792-25831884)
chr7 (6-103)||(29477735-29477832)
chr7 (6-134)||(46299379-46299507)
[»] scaffold0009 (1 HSPs)
scaffold0009 (6-125)||(163843-163962)
[»] scaffold0226 (1 HSPs)
scaffold0226 (6-127)||(5716-5837)
[»] scaffold0119 (1 HSPs)
scaffold0119 (6-134)||(39672-39799)
[»] scaffold0555 (1 HSPs)
scaffold0555 (94-127)||(4882-4915)
[»] scaffold0046 (1 HSPs)
scaffold0046 (105-134)||(86249-86278)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 297
Target Start/End: Original strand, 15591116 - 15591404
Alignment:
Q  9 aagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaagaat 108  Q
    |||||||||||||||||||||||| |||||||||||| | |||||| |||||||| ||||||||||||||||||||||||| |||||  |||||||||||    
T  15591116 aagaaaataatagatcgttaacacgatttaaaggagggagaagagaaaaaagttatttgttaactcaaaagaacttttgggatgagtgcaagtgaagaat 15591215  T
Q  109 gagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctcata 208  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  15591216 gagagctctatttataggtgaggagacaaagataagttacaaatccaatgattaggattagttgatcgctacaatatcaatgacatgatctcgcctcata 15591315  T
Q  209 aatgagcactcaatgggatagtccagttgagaattttttaattcacatatctgtacacataaaaacagtctcccatccaagtatggata 297  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15591316 aatgagcactcaatgggatagtcgagttgagaattttttaattcacatatatgtacacataaaaacagtctcccatccaagtatggata 15591404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 156
Target Start/End: Complemental strand, 18265080 - 18264931
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagag-ataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaa 104  Q
    |||| ||||| ||||| |||| |||||||  ||||||||| | || || | |||||||| |||  |||| || ||||||||||||||||||| ||||||     
T  18265080 gagaggaaaagaatagctcgtcaacacaagctaaaggagggagaacaggaaaaaagttatttgacaacttaagagaacttttggggtgagtagaagtgag 18264981  T
Q  105 gaatgagagctctatttataggtgaggaggcaaagataagttacaaatccaa 156  Q
    ||| ||| ||||||||||||| ||||||| ||||||| |||| |||||||||    
T  18264980 gaa-gagtgctctatttatagatgaggagccaaagatgagtt-caaatccaa 18264931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 1285836 - 1285749
Alignment:
Q  1 aaaaagagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttgg 88  Q
    |||| |||||||||| ||||| |||| ||| ||| |||||||||| | ||||||||||||||  |||  ||||||| |||||||||||    
T  1285836 aaaaggagaagaaaagaatagctcgtcaacgcaagttaaaggagggagaagagataaaagttttttgacaactcaatagaacttttgg 1285749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 24956294 - 24956421
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| |||| |||||||  ||||| ||| | |||||| |||||||  |||  ||||||| ||||||||||| ||| |||   |||  |    
T  24956294 gagaagaaaagaatagctcgtcaacacaagctaaag-agggagaagagagaaaagttctttgacaactcaagagaacttttggtgtgtgtaattgtgtgg 24956392  T
Q  106 aatgagagctctatttataggtgaggagg 134  Q
     ||||| ||||||||||||||||||||||    
T  24956393 tatgagggctctatttataggtgaggagg 24956421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 24964754 - 24964881
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| |||| |||||||  ||||| ||| | |||||| |||||||  |||  ||||||| ||||||||||| ||| |||   |||  |    
T  24964754 gagaagaaaagaatagctcgtcaacacaagctaaag-agggagaagagagaaaagttctttgacaactcaagagaacttttggtgtgtgtaattgtgtgg 24964852  T
Q  106 aatgagagctctatttataggtgaggagg 134  Q
     ||||| ||||||||||||||||||||||    
T  24964853 tatgagggctctatttataggtgaggagg 24964881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 16563746 - 16563713
Alignment:
Q  105 gaatgagagctctatttataggtgaggaggcaaa 138  Q
    ||||||||||||||||||||||||||||| ||||    
T  16563746 gaatgagagctctatttataggtgaggagtcaaa 16563713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 134
Target Start/End: Original strand, 20639417 - 20639446
Alignment:
Q  105 gaatgagagctctatttataggtgaggagg 134  Q
    ||||||||||||||||||||||||||||||    
T  20639417 gaatgagagctctatttataggtgaggagg 20639446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 6 - 255
Target Start/End: Original strand, 14105104 - 14105354
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||| ||||| ||||| |||| |||||||  ||||||||  | |||||| |||||||| |||  ||||||| ||||||||||||||||||| |||||| |    
T  14105104 gagaggaaaagaatagctcgtcaacacaagctaaaggagagagaagagagaaaagttatttgacaactcaagagaacttttggggtgagtaaaagtgagg 14105203  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctc 205  Q
     |   ||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| | |||||| |||||||| |||||||| ||||    
T  14105204 gagaggagctctatttataggtgaggagccaaagatgagttacaaatccaatggctaggattagttgacctctacaaaatcaatgacatgatttctcctc 14105303  T
Q  206 ataaatgagcactcaatgggatagtccagttgag-aattttttaattcaca 255  Q
    | |||||||||||||||||||||||  |  |||| ||||||||||||||||    
T  14105304 agaaatgagcactcaatgggatagttgacatgagaaattttttaattcaca 14105354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 44957120 - 44956999
Alignment:
Q  8 gaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaagaa 107  Q
    |||||||| ||||| |||| || ||||  ||||||||| | |||||| |||| ||  ||   ||||||| ||||||||||||||||||| |||||| |||    
T  44957120 gaagaaaagaatagctcgtcaagacaagctaaaggagggagaagagagaaaatttctttaacaactcaagagaacttttggggtgagtacaagtgaggaa 44957021  T
Q  108 tgagagctctatttataggtga 129  Q
    |||||| |||||||||||||||    
T  44957020 tgagagttctatttataggtga 44956999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 13059952 - 13059890
Alignment:
Q  111 gagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttga 173  Q
    |||| |||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||||||    
T  13059952 gagcactatttataggtgaggagtcaaagataagttataaattcaatggctaggattagttga 13059890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 134
Target Start/End: Complemental strand, 35139214 - 35139087
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| |||| ||||||| |||||| ||| | |||||| |||||||  |||  ||||||| ||||||||||| ||| |||   |||  |    
T  35139214 gagaagaaaagaatagctcgtcaacacaagttaaag-agggagaagagagaaaagttctttgacaactcaagagaacttttggtgtgtgtaattgtgtgg 35139116  T
Q  106 aatgagagctctatttataggtgaggagg 134  Q
     ||||| ||||||||||||||||||||||    
T  35139115 tatgagggctctatttataggtgaggagg 35139087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 134
Target Start/End: Complemental strand, 35147550 - 35147423
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| |||| ||||||| |||||| ||| | |||||| |||||||  |||  ||||||| ||||||||||| ||| |||   |||  |    
T  35147550 gagaagaaaagaatagctcgtcaacacaagttaaag-agggagaagagagaaaagttctttgacaactcaagagaacttttggtgtgtgtaattgtgtgg 35147452  T
Q  106 aatgagagctctatttataggtgaggagg 134  Q
     ||||| ||||||||||||||||||||||    
T  35147451 tatgagggctctatttataggtgaggagg 35147423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 15952517 - 15952644
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| |||| |||||||  ||||| ||| | |||||| |||||||  |||  ||||||| ||||||||||| ||| |||   |||  |    
T  15952517 gagaagaaaagaatagctcgtcaacacaagctaaag-agggagaagagagaaaagttctttgacaactcaagagaacttttggtgtgtgtaattgtgtgg 15952615  T
Q  106 aatgagagctctatttataggtgaggagg 134  Q
     ||||| ||||||||||||||||||||||    
T  15952616 tatgagggctctatttataggtgaggagg 15952644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 134
Target Start/End: Original strand, 19883992 - 19884021
Alignment:
Q  105 gaatgagagctctatttataggtgaggagg 134  Q
    ||||||||||||||||||||||||||||||    
T  19883992 gaatgagagctctatttataggtgaggagg 19884021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 7146342 - 7146589
Alignment:
Q  12 aaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaagaatgag 111  Q
    |||| ||||| |||| ||||||| |||||||| |  ||||||| |||||||| |||  ||||||||||||||||||||||||||| ||| ||||||||||    
T  7146342 aaaagaataggtcgtcaacacaagttaaaggaaggtaaagagagaaaagttatttgacaactcaaaagaacttttggggtgagtaaaagcgaagaatgag 7146441  T
Q  112 agctctatttataggtgaggaggcaaagataagttacaaatccaatgac--taggattagttgatcgctacaatatcaatgagatgatttcgcctcataa 209  Q
    | ||||||||||||| |||||| ||||||||||||||||||||||||||  |||||||| |||| | |||||| |||||||   |||| |||||||||||    
T  7146442 aactctatttataggcgaggagccaaagataagttacaaatccaatgactataggattaattgaccactacaaaatcaatgtcgtgatctcgcctcataa 7146541  T
Q  210 atgagcactcaatgggatagtccagttgagaattttttaattcacatat 258  Q
    | |||||||||||| ||| ||  | |||| ||||||||||||| |||||    
T  7146542 acgagcactcaatgagatggttgacttga-aattttttaattcgcatat 7146589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 6 - 255
Target Start/End: Original strand, 19950339 - 19950589
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||| ||||| ||||| |||| ||||||| |||||||||| | |||||| |||||||  |||  ||||||| |||||||||| |||||||| |||||| |    
T  19950339 gagaggaaaagaatagctcgtcaacacaaattaaaggagggagaagagagaaaagttctttgacaactcaagagaacttttgaggtgagtagaagtgagg 19950438  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctc 205  Q
     |   || |||||||||||||||| ||| ||||||| |||||||||||||||| ||| |||||||||| | |||||| |||||||| |||||||| ||||    
T  19950439 gagaggaactctatttataggtgaagagccaaagatgagttacaaatccaatggctatgattagttgacctctacaaaatcaatgacatgatttctcctc 19950538  T
Q  206 ataaatgagcactcaatgggatagtccagttgagaa-ttttttaattcaca 255  Q
    |||||||||||||||||  ||||||  |  |||||| ||||||||||||||    
T  19950539 ataaatgagcactcaataagatagttgatatgagaatttttttaattcaca 19950589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 6 - 255
Target Start/End: Original strand, 19954793 - 19955042
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||| ||||| ||||| |||| ||||||   ||||||||| | |||||| |||| ||  |||  ||||||| ||||||||||||||||||| |||||  |    
T  19954793 gagaggaaaagaatagctcgtcaacacatgctaaaggagggagaagagagaaaaattctttgacaactcaagagaacttttggggtgagtagaagtgtgg 19954892  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctc 205  Q
     |   || ||||||||||| |||| ||| ||||||| ||||||||||||| || |||||||||||||| | |||||| |||||||| |||||||  ||||    
T  19954893 gagaggaactctatttataagtgaagagccaaagatgagttacaaatccattggctaggattagttgacctctacaaaatcaatgacatgatttatcctc 19954992  T
Q  206 ataaatgagcactcaatgggatagtccagttgagaattttttaattcaca 255  Q
    ||||||||||||||||| |||||||  |  ||||||||||||||||||||    
T  19954993 ataaatgagcactcaataggatagttgacatgagaattttttaattcaca 19955042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 255
Target Start/End: Original strand, 2470497 - 2470746
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||| ||||| |||||  ||| |||||||  ||||||||| | |||||| |||||||  |||  ||||||| | |||||||||| | |||| |||||| |    
T  2470497 gagaggaaaagaatagcccgtcaacacaagctaaaggagggagaagagagaaaagttctttgacaactcaagataacttttgggatcagtagaagtgagg 2470596  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctc 205  Q
     |   ||||||||||||||||||| ||| ||||||| |||||||||||||||| |||||||||| ||| | |||||| |||||||| |  ||||| ||||    
T  2470597 gagaggagctctatttataggtgaagagccaaagatgagttacaaatccaatggctaggattagctgacctctacaaaatcaatgacaaaatttctcctc 2470696  T
Q  206 ataaatgagcactcaatgggatagtccagttgagaattttttaattcaca 255  Q
    |||||||| ||||||||| ||||||  |  ||||||||||||||||||||    
T  2470697 ataaatgaacactcaatgtgatagttgacatgagaattttttaattcaca 2470746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 21640729 - 21640587
Alignment:
Q  12 aaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaagaatgag 111  Q
    |||| ||||| |||| |||||||  |||| |||| | |||||| |||||||  |||  ||||||| ||||||||||||||||||| |||||| ||| |||    
T  21640729 aaaagaatagctcgtcaacacaagctaaatgagggagaagagagaaaagttctttgacaactcaagagaacttttggggtgagtaaaagtgaggaa-gag 21640631  T
Q  112 agctctatttataggtgaggaggcaaagataagttacaaatccaa 156  Q
     ||||||||||||||||||||| ||||||| |||| |||||||||    
T  21640630 tgctctatttataggtgaggagtcaaagatgagtt-caaatccaa 21640587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 156
Target Start/End: Complemental strand, 4543869 - 4543721
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||| ||||| ||||| |||| |||||||  ||||||||| | |||||| |||||||  |||  ||||||| ||||||||||||||||||| |||||| |    
T  4543869 gagaggaaaagaatagctcgtcaacacaagctaaaggagggagaagagagaaaagttctttgacaactcaagagaacttttggggtgagtagaagtgagg 4543770  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaatccaa 156  Q
    || ||| |||||| |||||| ||||||| ||| ||| |||| |||||||||    
T  4543769 aa-gagtgctctagttatagatgaggagccaatgattagtt-caaatccaa 4543721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 30779478 - 30779533
Alignment:
Q  118 atttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttga 173  Q
    ||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||    
T  30779478 atttataggcgaggagccaaagataagttacaaatccaatgactatgattggttga 30779533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 134
Target Start/End: Complemental strand, 32007342 - 32007215
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| |||| |||||||  ||||  ||| | |||||| |||||||  |||  ||||||| ||||||||||| ||| | |   |||  |    
T  32007342 gagaagaaaagaatagctcgtcaacacaagctaaaa-agggagaagagagaaaagttctttgacaactcaagagaacttttggtgtgtgaaattgtgtgg 32007244  T
Q  106 aatgagagctctatttataggtgaggagg 134  Q
    |||||||||||||||||||||||||||||    
T  32007243 aatgagagctctatttataggtgaggagg 32007215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 34517714 - 34517854
Alignment:
Q  1 aaaaagagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataag 100  Q
    |||| |||||||||| ||||  |||| ||||||| ||||| |||  | ||||||||||  ||  |||  |||| || | ||||||||| || | || |||    
T  34517714 aaaaggagaagaaaagaataactcgtcaacacaagttaaaagagagataagagataaattttttttgacaacttaagataacttttggtgtaaatagaag 34517813  T
Q  101 tgaagaatgagagctctatttataggtgaggaggcaaagat 141  Q
     |||||||||||  | ||||||||||||||||| |||||||    
T  34517814 cgaagaatgagaattttatttataggtgaggagacaaagat 34517854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 6 - 255
Target Start/End: Complemental strand, 16595543 - 16595294
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||| ||||| ||| | |||| |||||||  ||||||||| | |||||| |||||||  ||   ||||||| |||||||||||||||| || |||||  |    
T  16595543 gagaggaaaagaattgctcgtcaacacaagctaaaggagggagaagagagaaaagttctttaacaactcaagagaacttttggggtgattagaagtgggg 16595444  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctc 205  Q
     |   || |||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| | |||||| |||||||| |||||||| ||||    
T  16595443 gagaggaactctatttataggtgaagagccaaagataagttacaaatccaatggctaggattagttgacctctacaaaatcaatgacatgatttctcctc 16595344  T
Q  206 ataaatgagcactcaatgggatagtccagttgagaattttttaattcaca 255  Q
    ||||||||||||||||| |||||||  |  ||||||||||||||||||||    
T  16595343 ataaatgagcactcaataggatagttgacatgagaattttttaattcaca 16595294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 111 - 255
Target Start/End: Complemental strand, 7216697 - 7216552
Alignment:
Q  111 gagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctcataaa 210  Q
    ||||||||||| ||||||| ||||||||||| |||||||||| ||||| ||| |||||||||| | |||||| |||||||| |||||||| |||||||||    
T  7216697 gagctctatttgtaggtgaagaggcaaagatgagttacaaattcaatggctaagattagttgacctctacaaaatcaatgacatgatttctcctcataaa 7216598  T
Q  211 tgagcactcaatgggatagtccagttgagaattt-tttaattcaca 255  Q
    |||||||||| |||||||||  |  ||||||||| |||||||||||    
T  7216597 tgagcactcagtgggatagttgatatgagaatttgtttaattcaca 7216552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 33722483 - 33722270
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttgggg-tgagtataagtgaa 104  Q
    |||||||||| ||||| | || |||||||  ||||||||| | |||||| |||||||  |||  ||||||||||||||||| ||| |||||| ||||||     
T  33722483 gagaagaaaagaatagcttgtcaacacaagctaaaggagggagaagagagaaaagttctttgacaactcaaaagaactttttgggatgagtagaagtgag 33722384  T
Q  105 gaatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcct 204  Q
    | |   |||||| |||||||||||| ||| ||||||||||||||||||| |||| ||| ||||| |||| || || || ||||||||  |||| |||| |    
T  33722383 ggagaggagctcaatttataggtgaagagccaaagataagttacaaatctaatggctatgattaattgaccgttagaaaatcaatgacttgatctcgcat 33722284  T
Q  205 cataaatgagcact 218  Q
    ||||||||||||||    
T  33722283 cataaatgagcact 33722270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 20513627 - 20513839
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| |||| |||||||  ||||||||| | |||||| |||||||  |||  ||||||| |||||||||| | |||||| |||||| |    
T  20513627 gagaagaaaagaatagctcgtcaacacaagctaaaggagggagaagagagaaaagttttttgacaactcaagagaacttttgagttgagtaaaagtgagg 20513726  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctc 205  Q
     |   |||||| |||||||||||  ||| |||||||||||| |||||||||||  ||| ||||||||| || || || ||||||||  |||  |||| |     
T  20513727 gagatgagctcaatttataggtgttgagccaaagataagttgcaaatccaatggttagaattagttgaccgttagaaaatcaatgacttgaactcgcatt 20513826  T
Q  206 ataaatgagcact 218  Q
    |||||||||||||    
T  20513827 ataaatgagcact 20513839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 2574912 - 2574700
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||  |||| || ||||  ||||||||| | ||||||||||||||  |||  ||||||| ||||||||||  || |||| ||||||||    
T  2574912 gagaagaaaagaatacctcgtcaatacaagctaaaggagggagaagagataaaagttctttgacaactcaagagaacttttgatgtaagtacaagtgaag 2574813  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctc 205  Q
     |   | |||| |||||||| ||| ||  |||||||||| ||||||||||| | |||| |||||||||||| || || ||||| |   |||| |||||||    
T  2574812 gagtggcgctcaatttatagatgatgaaccaaagataagatacaaatccaacggctagaattagttgatcgttataaaatcaacggcttgatatcgcctc 2574713  T
Q  206 ataaatgagcact 218  Q
    |||||||||||||    
T  2574712 ataaatgagcact 2574700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 55081276 - 55081064
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||| ||||| ||||| |||| |||||||  ||||||||| | |||||| ||||  |  |||  ||||||| ||||||||| | ||||||| |||||| |    
T  55081276 gagaggaaaagaatagctcgtcaacacaagctaaaggagggagaagagagaaaaactctttgacaactcaagagaacttttagtgtgagtagaagtgagg 55081177  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctc 205  Q
     |   |||||| |||||||||||| ||| |||||||||||||||||||||||| |||||||||  ||| || || || |||||||   | || || ||||    
T  55081176 gagaggagctcaatttataggtgaagagccaaagataagttacaaatccaatggctaggattaaatgaccgttagaaaatcaatggctttatctcacctc 55081077  T
Q  206 ataaatgagcact 218  Q
    |||||||||||||    
T  55081076 ataaatgagcact 55081064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 12613677 - 12613792
Alignment:
Q  12 aaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaagaatgag 111  Q
    |||||||||| |||| |||||||  ||||||||| | |||||| |||||||| |||  ||||||| ||||||||| | ||  ||||||||||  ||||||    
T  12613677 aaaataatagctcgtcaacacaagataaaggagggagaagagagaaaagttatttgacaactcaagagaactttttgtgtctgtataagtgagtaatgag 12613776  T
Q  112 agctctatttataggt 127  Q
    ||||||||||||||||    
T  12613777 agctctatttataggt 12613792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 230
Target Start/End: Complemental strand, 40684394 - 40684213
Alignment:
Q  49 aagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaagaatgagagctctatttataggtgaggaggcaaagataagttac 148  Q
    |||||| |||||||  |||  ||||||| | ||||||||| || |||| |||||| |||| ||| ||||||||||||| |||| |  ||| |||||||||    
T  40684394 aagagagaaaagttctttgacaactcaagaaaacttttggtgtcagtacaagtgaggaataagaactctatttataggcgaggggttaaatataagttac 40684295  T
Q  149 aaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctcataaatgagcactcaatgggatagt 230  Q
    ||||| |||     |||||||||||  | ||||| |||||||  ||||| | |||||||||||||||||||| ||| |||||    
T  40684294 aaatctaatagtcgggattagttgactggtacaaaatcaatggcatgatcttgcctcataaatgagcactcattggcatagt 40684213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 8816970 - 8817115
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| |||| |||||||  |||| |||| | |||||| |||||||  |||  ||||||| | ||||||||| ||| | |   |||  |    
T  8816970 gagaagaaaagaatagctcgtcaacacaagctaaatgagggagaagagagaaaagttctttgacaactcaagataacttttggtgtgtgaaattgtgtgg 8817069  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaa 151  Q
    |||| ||||||||||||||||||||||| |||| ||||||| ||||    
T  8817070 aatgtgagctctatttataggtgaggagccaaatataagtttcaaa 8817115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 10566771 - 10566821
Alignment:
Q  112 agctctatttataggtgaggaggcaaagataagttacaaatccaatgacta 162  Q
    |||||||||||||  ||| ||||||||||| ||| ||||||||||||||||    
T  10566771 agctctatttataaatgatgaggcaaagatgagtaacaaatccaatgacta 10566821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 39991369 - 39991287
Alignment:
Q  138 agataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctcataaatgagcactca 220  Q
    ||||||||||||||| ||||| ||| ||| | |||| || ||||| ||||| ||  |||| ||| ||||||||||||||||||    
T  39991369 agataagttacaaattcaatggctatgatcatttgaccgttacaaaatcaacgatctgatctcgtctcataaatgagcactca 39991287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 6 - 258
Target Start/End: Complemental strand, 2493396 - 2493143
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||| ||||| ||||  |||| |||||||  |||| |||| | |||||| |||||||  |||  ||||||||||||||||||| ||||  | |||||| |    
T  2493396 gagatgaaaagaataactcgtcaacacaagctaaatgagggagaagagagaaaagttttttgacaactcaaaagaacttttggtgtgatcagaagtgagg 2493297  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctc 205  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||  ||||||||||||  | | |||| |||||||| ||||| | |||||    
T  2493296 aatgagagctctatttataggtgaggagccaaagataagttacaaattcaatggttaggattagttggccaccacaaaatcaatgacatgatattgcctc 2493197  T
Q  206 ataaatgagcactcaatgggatagtccagttgagaatt-ttttaattcacatat 258  Q
    |||||||||||||||| ||||||||  |  |||||||| |||||||||||||||    
T  2493196 ataaatgagcactcaaagggatagttgacatgagaatttttttaattcacatat 2493143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 70 - 247
Target Start/End: Complemental strand, 23191532 - 23191355
Alignment:
Q  70 aactcaaaagaacttttggggtgagtataagtgaagaatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattag 169  Q
    ||||||||||| ||||||||||||| | |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||    
T  23191532 aactcaaaagatcttttggggtgagaagaagtgaggaaagagagctctatttataggtgaggagtcaaagataagttacaaatccaatggttaggattag 23191433  T
Q  170 ttgatcgctacaatatcaatgagatgatttcgcctcataaatgagcactcaatgggatagtccagttgagaatttttt 247  Q
    |||| | | |||| |||||||| ||||| | || ||||||||||| |||||||| ||||||  |  ||||||||||||    
T  23191432 ttgaccaccacaaaatcaatgacatgatattgcttcataaatgagaactcaatgagatagttgacatgagaatttttt 23191355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 36725228 - 36725440
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| |||| |||||||  ||||||||| | |||||| |||||||| |||  ||||||||||||||||||| ||||||| |||||| |    
T  36725228 gagaagaaaagaatagctcgtcaacacaagctaaaggagggagaagagagaaaagttatttgacaactcaaaagaacttttggtgtgagtagaagtgagg 36725327  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctc 205  Q
     | | |||||| |||||||||||| ||| |||||||||||||||||||||||| ||||||||| |||| || || || |||||||   |||| |||| ||    
T  36725328 gaggggagctcaatttataggtgaagagccaaagataagttacaaatccaatggctaggattaattgaccgttagaaaatcaatggcttgatctcgcatc 36725427  T
Q  206 ataaatgagcact 218  Q
    |||||||||||||    
T  36725428 ataaatgagcact 36725440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 28 - 255
Target Start/End: Complemental strand, 24159367 - 24159140
Alignment:
Q  28 aacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaagaatgagagctctatttataggt 127  Q
    |||||||  |||| |||| |||||||| |||||| | |||  ||||||| ||||||||||||||||||| || ||  | |  |||||| |||||||||||    
T  24159367 aacacaagctaaaagaggaaaaagagagaaaagtcatttgacaactcaagagaacttttggggtgagtagaaatgtgggagaagagctttatttataggt 24159268  T
Q  128 gaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctcataaatgagcactcaatgggat 227  Q
    || ||| ||||||| ||||| |||||||||| |||||||||||||| | |||||| |||||||| || ||||| ||| |||||||||||||||||||||     
T  24159267 gaagagtcaaagatgagttataaatccaatggctaggattagttgacctctacaaaatcaatgacataatttctccttataaatgagcactcaatgggac 24159168  T
Q  228 agtccagttgagaattttttaattcaca 255  Q
    |||  |  |||  |||||||||||||||    
T  24159167 agttgacatgaagattttttaattcaca 24159140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 33380503 - 33380291
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||| ||||| ||||| |||| |||||||  ||||||||| |  ||||| |||||||  |||  ||||||||||||||||||| ||||||| |||||  |    
T  33380503 gagaggaaaagaatagctcgtcaacacaagctaaaggagggagcagagagaaaagttctttgacaactcaaaagaacttttggtgtgagtagaagtgggg 33380404  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctc 205  Q
     |  ||||||| |||||||||||| ||| |||||||||||||||||| |||||||||||||||||| | || || || |||||||   |||| || | ||    
T  33380403 gagaagagctcaatttataggtgaagagccaaagataagttacaaattcaatgactaggattagttcaccgttagaaaatcaatggcttgatctcacatc 33380304  T
Q  206 ataaatgagcact 218  Q
    |||||||||||||    
T  33380303 ataaatgagcact 33380291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 12906662 - 12906846
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| |||| |||||||  ||||||||| | |||| | |||||||  |||  ||||||| | |||||||||  |||||| |||||| |    
T  12906662 gagaagaaaagaatagctcgtcaacacaagctaaaggagggagaagatagaaaagttctttgacaactcaagataacttttggtttgagtagaagtgagg 12906761  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatg 190  Q
     |   |||||| |||||||||||| ||| ||||||||||||||||||||||||  ||||||||||||| || || || |||||||    
T  12906762 gagaggagctcaatttataggtgaagagtcaaagataagttacaaatccaatggttaggattagttgaccgttagaaaatcaatg 12906846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 6 - 162
Target Start/End: Complemental strand, 25661430 - 25661274
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||  ||||| |||| |||||||   |||||||| | | |||| |||||||  |||  ||||||| ||||||||||  |||  || || |||||    
T  25661430 gagaagaaatgaatagctcgtcaacacaagccaaaggagggagatgagagaaaagttctttgacaactcaagagaacttttgttgtgtttacaaatgaag 25661331  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgacta 162  Q
    ||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||    
T  25661330 aatgagaactctatttataggtgaagaggcagagataagttacaaatccaatgacta 25661274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 37 - 216
Target Start/End: Complemental strand, 28857604 - 28857425
Alignment:
Q  37 taaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaagaatgagagctctatttataggtgaggaggca 136  Q
    ||||||||| | |||| | |||||||  |||  ||||||||||||||||||| ||||||| |||||| |||  |||||||||||||||||||||||| ||    
T  28857604 taaaggagggagaagacagaaaagttctttgacaactcaaaagaacttttggagtgagtagaagtgaggaacaagagctctatttataggtgaggagcca 28857505  T
Q  137 aagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctcataaatgagca 216  Q
    ||||| ||||  | |||||||| ||| ||| | ||||  | ||||| || |||||  |||  || |||||||||||||||    
T  28857504 aagatgagttttagatccaatggctaagatcatttgacagttacaaaattaatgatttgacctcacctcataaatgagca 28857425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 25659694 - 25659604
Alignment:
Q  165 attagttgatcgctacaatatcaatgagatgatttcgcctcataaatgagcactcaatgggatagtccagttgagaattttttaattcaca 255  Q
    ||||||||| |||||||| |||||||| ||||| || ||| |||||||||||||||||| ||||||  |  ||||||||||||||||||||    
T  25659694 attagttgaccgctacaaaatcaatgacatgatctctcctaataaatgagcactcaatgagatagttgacatgagaattttttaattcaca 25659604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 27761415 - 27761291
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||| ||||| ||||| |||| |||||||  ||||||||| | |||||| |||||||| |||  ||||| |  ||||||||| |||||||| |||||| |    
T  27761415 gagaggaaaagaatagctcgtcaacacaagctaaaggagggagaagagagaaaagttatttgacaactcga--gaacttttgaggtgagtagaagtgagg 27761318  T
Q  106 aatgagagctctatttataggtgaggag 133  Q
    || ||| |||||||||||||||||||||    
T  27761317 aa-gagtgctctatttataggtgaggag 27761291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 31064476 - 31064616
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    ||||| |||| ||||| |||| |||||||  ||||||||| | |||||| |||| ||  |||  ||||||| |||||||||| |||||| | |||||| |    
T  31064476 gagaataaaagaatagttcgtcaacacaagctaaaggagggagaagagagaaaaattctttgacaactcaagagaacttttgtggtgagaagaagtgagg 31064575  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagtt 146  Q
    ||  |||||| ||||||||||||||||  ||||||| ||||    
T  31064576 aacaagagctatatttataggtgaggaaccaaagatgagtt 31064616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 157
Target Start/End: Complemental strand, 19309184 - 19309033
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| |||| |||||||  ||||||| | | || ||| |||||||  ||   ||||||| |||||||||||||| |||| |||||| |    
T  19309184 gagaagaaaagaatagctcgtcaacacaagctaaaggaaggagaaaagagaaaagttctttaacaactcaagagaacttttggggtaagtagaagtgagg 19309085  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaatccaat 157  Q
     |   |||||| |||||||||||| ||  |||||||||||||||||| ||||    
T  19309084 gagaggagctcaatttataggtgaagaaccaaagataagttacaaattcaat 19309033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 52024451 - 52024537
Alignment:
Q  136 aaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctcataaatgagcactcaatg 223  Q
    |||||||||||| |||||||||||||| |||| |||||  |  |||| ||||||||  |||| | |||||||||||||||||||||||    
T  52024451 aaagataagttataaatccaatgactatgatt-gttgactgtcacaaaatcaatgatctgatattgcctcataaatgagcactcaatg 52024537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 9352883 - 9352758
Alignment:
Q  8 gaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaagaa 107  Q
    |||||||| ||||| |||| |||| ||  ||||||||| | |||||| |||| |   |||  ||||||| ||||||||||| |||||||||||||| | |    
T  9352883 gaagaaaagaatagctcgtcaacagaagataaaggagggagaagagagaaaaatgctttgaaaactcaagagaacttttggtgtgagtataagtgaggga 9352784  T
Q  108 tgagagctctatttataggtgaggag 133  Q
    | ||| || |||||||||| ||||||    
T  9352783 taagatctatatttataggcgaggag 9352758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 218
Target Start/End: Original strand, 32987798 - 32987945
Alignment:
Q  70 aactcaaaagaacttttggggtgagtataagtgaagaatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattag 169  Q
    ||||||||| ||||||||  ||||||| |||||| | |  ||||||| ||||||||  || | | |||| ||| ||||||||| ||| ||||| ||||||    
T  32987798 aactcaaaaaaacttttgctgtgagtaaaagtgagggagaagagctcaatttatagc-gacgggtcaaatatacgttacaaattcaaagactaagattag 32987896  T
Q  170 ttgatcgctacaatatcaatgagatgatttcgcctcataaatgagcact 218  Q
    || | || ||||| |||||||   |||| || |||||||||||| ||||    
T  32987897 ttaaccgttacaaaatcaatggtttgatctcacctcataaatgaacact 32987945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 70 - 253
Target Start/End: Original strand, 4662749 - 4662932
Alignment:
Q  70 aactcaaaagaacttttggggtgagtataagtgaagaatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattag 169  Q
    ||||||| |||||||||||||| | || ||||||  |||||||| ||||||||||||| ||||| || ||||||||||||||||||||| ||||||||||    
T  4662749 aactcaagagaacttttggggtaattacaagtgagaaatgagagttctatttataggtaaggagccagagataagttacaaatccaatgcctaggattag 4662848  T
Q  170 ttgatcgctacaatatcaatgagatgatttcgcctcataaatgagcactcaatgggatagtccagttgagaattttttaattca 253  Q
    |||| |||||||| |||||||| || ||||| |||||||||||||||||||||| ||||||  |  ||||||| ||||||||||    
T  4662849 ttgaccgctacaaaatcaatgacataatttctcctcataaatgagcactcaatgagatagttgacatgagaatattttaattca 4662932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 5 - 255
Target Start/End: Complemental strand, 48431878 - 48431630
Alignment:
Q  5 agagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaa 104  Q
    ||||| ||||| ||||| ||||  ||||||  ||||||||| | |||||| |||||||| |||  ||||||| ||||||||||||||||||| |||||      
T  48431878 agagaggaaaagaatagttcgtcgacacaacctaaaggagggagaagagagaaaagttatttgacaactcaagagaacttttggggtgagtagaagtgtg 48431779  T
Q  105 gaatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcct 204  Q
    | |   ||||||||||||||||||| ||| |||| || |||||||||||||||| ||||||||||||||   |||||  |||||||| ||||||||  ||    
T  48431778 ggagatgagctctatttataggtgaagagccaaatatgagttacaaatccaatggctaggattagttgacatctaca--atcaatgacatgatttcttct 48431681  T
Q  205 cataaatgagcactcaatgggatagtccagttgagaattttttaattcaca 255  Q
    ||||||||||||||||||| ||||||  |  ||||||||||||||||||||    
T  48431680 cataaatgagcactcaatgagatagttgacatgagaattttttaattcaca 48431630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 48435462 - 48435238
Alignment:
Q  5 agagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaa 104  Q
    ||||| ||||| ||||| | || |||||||  ||||||||| | |||||| |||||||  ||   |||| || ||||||||||| ||||||| |||||||    
T  48435462 agagaggaaaagaatagcttgtcaacacaagctaaaggagggagaagagagaaaagttctttcacaacttaagagaacttttggagtgagtagaagtgaa 48435363  T
Q  105 gaatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcct 204  Q
    | |   | ||||||||||||||| | ||| ||||||| |||||||||||||||| ||||||||||||||   |||||| |||||||| |||||||| |||    
T  48435362 ggagatgggctctatttataggtaaagagccaaagatgagttacaaatccaatggctaggattagttgacatctacaa-atcaatgacatgatttctcct 48435264  T
Q  205 cataaatgagcactcaatgggatagt 230  Q
    ||||||||||||||||||| ||||||    
T  48435263 cataaatgagcactcaatgagatagt 48435238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 16983488 - 16983689
Alignment:
Q  12 aaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaagaatgag 111  Q
    |||| ||||| |||| |||||||  ||||||||| | |||||| |||| ||| |||  ||||||| ||||||||||||| || || |||||| | |   |    
T  16983488 aaaagaatagctcgtcaacacaagctaaaggagggagaagagagaaaaattatttgacaactcaagagaacttttggggagaatagaagtgagggagagg 16983587  T
Q  112 agctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctcataaat 211  Q
    ||||||| ||||||||||  || ||||||| | |||||||||||||||||| |||||||||| || || || |||||||   |||| |||||||||||||    
T  16983588 agctctacttataggtgaaaagccaaagatgaattacaaatccaatgactatgattagttgaccgttaaaaaatcaatggcttgatctcgcctcataaat 16983687  T
Q  212 ga 213  Q
    ||    
T  16983688 ga 16983689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 44362986 - 44363113
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||||||||| |||| |||||||  |||| |||| | |||||| |||||||| |||  ||||||| ||||||||||| ||| ||  ||| |  |    
T  44362986 gagaagaaaataatagctcgtcaacacaagctaaatgagggagaagagagaaaagttatttg-aaactcaatagaacttttggtgtgtgttgaagagtgg 44363084  T
Q  106 aatgagagctctatttataggtgaggagg 134  Q
    |||||||||| ||||||||||||||||||    
T  44363085 aatgagagctatatttataggtgaggagg 44363113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 133
Target Start/End: Original strand, 21638018 - 21638144
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| |||| |||||||  ||||| ||| | |||||| |||||||  |||  ||||||| ||||||||||| ||| | |   |||  |    
T  21638018 gagaagaaaagaatagctcgtcaacacaagctaaag-agggagaagagagaaaagttctttgacaactcaagagaacttttggtgtgtgaaattgtgtgg 21638116  T
Q  106 aatgagagctctatttataggtgaggag 133  Q
    ||||||||||||||||||||||||||||    
T  21638117 aatgagagctctatttataggtgaggag 21638144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 14880771 - 14880898
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| |||| |||||||  ||||| ||| | |||||| |||||||  |||  ||||||| ||||||||||  ||| | |   |||  |    
T  14880771 gagaagaaaagaatagctcgtcaacacaagctaaag-agggagaagagagaaaagttctttgacaactcaagagaacttttgatgtgtgaaattgtgtgg 14880869  T
Q  106 aatgagagctctatttataggtgaggagg 134  Q
    |||||||||||||||||||||||||||||    
T  14880870 aatgagagctctatttataggtgaggagg 14880898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 14892586 - 14892713
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| |||| |||||||  ||||| ||| | |||||| |||||||  |||  ||||||| ||||||||||  ||| | |   |||  |    
T  14892586 gagaagaaaagaatagctcgtcaacacaagctaaag-agggagaagagagaaaagttctttgacaactcaagagaacttttgatgtgtgaaattgtgtgg 14892684  T
Q  106 aatgagagctctatttataggtgaggagg 134  Q
    |||||||||||||||||||||||||||||    
T  14892685 aatgagagctctatttataggtgaggagg 14892713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 134
Target Start/End: Complemental strand, 41007180 - 41007051
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataa--gtga 103  Q
    |||||||||| ||||| ||||||||||||  ||||  ||| | |||||| |||||||  |||  ||||||| ||||||||| ||||| || |||  |||     
T  41007180 gagaagaaaagaatagctcgttaacacaagctaaat-agggagaagagagaaaagttctttgacaactcaagagaactttttgggtgtgtgtaattgtgt 41007082  T
Q  104 agaatgagagctctatttataggtgaggagg 134  Q
     | ||||| ||||||||||||||||||||||    
T  41007081 ggtatgagggctctatttataggtgaggagg 41007051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 134
Target Start/End: Complemental strand, 11181276 - 11181247
Alignment:
Q  105 gaatgagagctctatttataggtgaggagg 134  Q
    ||||||||||||||||||||||||||||||    
T  11181276 gaatgagagctctatttataggtgaggagg 11181247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 70 - 255
Target Start/End: Original strand, 35130210 - 35130394
Alignment:
Q  70 aactcaaaagaacttttggggtgagtataagtgaagaatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattag 169  Q
    ||||||| |||||||||||| |||||| |||||| | |   ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||    
T  35130210 aactcaagagaacttttgggatgagtagaagtgagggagaggagctctatttataggtgaagagtcaaagatgagttacaaatccaatgactaggattag 35130309  T
Q  170 ttgatcgctacaatatcaatgagatgatttcgcctcataaatgagcactcaatgggatagtccagttgagaattttttaattcaca 255  Q
    ||||   |||||| |||||||| |||||||| |||||||||||||||||||||| ||||||  |  |||||||||| |||||||||    
T  35130310 ttgacatctacaa-atcaatgacatgatttctcctcataaatgagcactcaatgagatagttgacgtgagaattttgtaattcaca 35130394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 32814645 - 32814423
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||| ||||| ||||| |||| |||||||  ||||||||  | |||||| |||||||  ||| |||||||| ||||||||||||||||||| || |||      
T  32814645 gagaggaaaagaatagctcgtcaacacaagctaaaggagagagaagagagaaaagttctttgataactcaagagaacttttggggtgagtagaattgagt 32814546  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctc 205  Q
     |   |||||| |||||||||||| ||| ||||||||||||||||||||| || |||||||||||||| | | |||| |||||||| ||||| |  ||||    
T  32814545 gagaggagctcaatttataggtgaagagccaaagataagttacaaatccattggctaggattagttgaccaccacaaaatcaatgacatgatatttcctc 32814446  T
Q  206 ataaatgagcactcaatgggata 228  Q
    |||||| |||| |||||||||||    
T  32814445 ataaataagcattcaatgggata 32814423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 228
Target Start/End: Original strand, 14776127 - 14776285
Alignment:
Q  70 aactcaaaagaacttttggggtgagtataagtgaagaatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattag 169  Q
    ||||||| ||||||||||| |||   | |||||| ||||| |||||||  |||||||||||||| ||||||||||||||||||||||||  |||||||||    
T  14776127 aactcaagagaacttttggtgtgcaaagaagtgaggaatgtgagctcttcttataggtgaggagccaaagataagttacaaatccaatggttaggattag 14776226  T
Q  170 ttgatcgctacaatatcaatgagatgatttcgcctcataaatgagcactcaatgggata 228  Q
    |||| |||   || || ||| | ||||| |||||||||||||||||||| |||| ||||    
T  14776227 ttgaccgccggaaaattaataacatgatctcgcctcataaatgagcacttaatgtgata 14776285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 183
Target Start/End: Complemental strand, 28969618 - 28969441
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| |||| |||||||  ||||||||| | |||||| |||| ||   ||  ||||||| |||| |||||| |||  ||||||| | |    
T  28969618 gagaagaaaagaatagctcgtcaacacaagctaaaggagggagaagagagaaaaattgtatgacaactcaagagaagttttggtgtgtctataagtaagg 28969519  T
Q  106 aatgagagctctatttataggtgaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaat 183  Q
    |||||||||||||||||||||||||||| |||| || ||||  | |||||||||||| ||| | |||| || ||||||    
T  28969518 aatgagagctctatttataggtgaggagacaaatatgagttttagatccaatgactaagatcatttgaccgttacaat 28969441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 14042164 - 14042336
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| |||| |||||||  ||||||||| | |||||| |||||||  |||  |||||||  |||||||||| |||| || |||||| |    
T  14042164 gagaagaaaagaatagctcgtcaacacaagctaaaggagggagaagagagaaaagttctttgacaactcaagggaacttttggtgtgaatagaagtgagg 14042263  T
Q  106 aatgagagctctatttata-----ggtgaggaggcaaagataagttacaaatccaatgactaggattagttga 173  Q
     |   |||||| |||||||     ||||| ||| |||||||||||||||||||| ||  ||||||||||||||    
T  14042264 gagaggagctcaatttatattataggtgaagagccaaagataagttacaaatccgatagctaggattagttga 14042336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 20452106 - 20452231
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| ||||||||||||  ||||  ||| | |||||| ||||||| ||||  ||||||| ||||||||||| ||| |||   |||  |    
T  20452106 gagaagaaaagaatagctcgttaacacaagctaaa-tagggagaagagagaaaagttcattgacaactcaagagaacttttggtgtgtgtaattgtgtgg 20452204  T
Q  106 aatgagagctctatttataggtgagga 132  Q
    |||||  ||||||||||||||||||||    
T  20452205 aatgatggctctatttataggtgagga 20452231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 134
Target Start/End: Original strand, 22764427 - 22764456
Alignment:
Q  105 gaatgagagctctatttataggtgaggagg 134  Q
    ||||||||||||||||||||||||||||||    
T  22764427 gaatgagagctctatttataggtgaggagg 22764456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 37 - 215
Target Start/End: Complemental strand, 171258 - 171080
Alignment:
Q  37 taaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaagaatgagagctctatttataggtgaggaggca 136  Q
    ||||||||| | |||||| |||||||  |||  ||||||| | |||||||||| |||||| |||||||| |   ||||||||||||||||||| ||| ||    
T  171258 taaaggagggagaagagagaaaagttctttgacaactcaagataacttttgggatgagtagaagtgaaggagaggagctctatttataggtgaagagcca 171159  T
Q  137 aagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctcataaatgagc 215  Q
    || || |||||||||||||||| ||||||||| |||| | |||||| |||||||| |||||||| ||||||||||||||    
T  171158 aaaatgagttacaaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagc 171080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 218
Target Start/End: Complemental strand, 6897954 - 6897764
Alignment:
Q  28 aacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaagaatgagagctctatttataggt 127  Q
    |||||||  ||||||||| | |||||| |||||||  |||  ||||||| |||||||||||||| |||| |||||| |    | | ||| ||||||||||    
T  6897954 aacacaagctaaaggagggagaagagagaaaagttctttgacaactcaagagaacttttggggttagtagaagtgagggggaaaaactcaatttataggt 6897855  T
Q  128 gaggaggcaaagataagttacaaatccaatgactaggattagttgatcgctacaatatcaatgagatgatttcgcctcataaatgagcact 218  Q
    || ||| |||||||||||||||||| ||||||||| |||||||||| || || || ||||||||  | || || | |||||||||||||||    
T  6897854 gaagagccaaagataagttacaaattcaatgactatgattagttgaccgttagaaaatcaatgacttaatctcacatcataaatgagcact 6897764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 25831884 - 25831792
Alignment:
Q  49 aagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaagaatgagagctctatttataggtgaggaggcaaagat 141  Q
    ||||||||||||||  |||  ||||||| ||||||||||| || || | ||||||  ||||| |||||||||||||||||||||| |||||||    
T  25831884 aagagataaaagttctttgacaactcaagagaacttttggtgtaagaagaagtgagaaatgaaagctctatttataggtgaggagccaaagat 25831792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 29477832 - 29477735
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtga 103  Q
    |||||||||| ||||| || | |||||||  ||||||||| | |||||| |||||||  |||  ||||||| ||||||||||| ||||||| ||||||    
T  29477832 gagaagaaaagaatagctcatcaacacaagctaaaggagggagaagagagaaaagttctttgacaactcaagagaacttttggtgtgagtagaagtga 29477735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 46299379 - 46299507
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||| ||||| |||| |||||||  |||| |||| | ||| || |||||||  |||  ||| ||| ||||||||||| ||| | |   |||| |    
T  46299379 gagaagaaaagaatagctcgtcaacacaagctaaatgagggagaagtgagaaaagttctttgacaacccaagagaacttttggtgtgtgaaattgtgagg 46299478  T
Q  106 aatgagagctctatttataggtgaggagg 134  Q
     ||||||||||||||||||||||||||||    
T  46299479 gatgagagctctatttataggtgaggagg 46299507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 163962 - 163843
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||| ||||| ||||| | || |||||||  ||||||||| | |||||| |||||||  |||  |||| || ||||||||||| ||  |||||||||| |    
T  163962 gagaggaaaagaatagctagtcaacacaagctaaaggagggagaagagagaaaagttttttgacaacttaagagaacttttggtgtttgtataagtgagg 163863  T
Q  106 aatgagagctctatttatag 125  Q
    ||||||||||||||||||||    
T  163862 aatgagagctctatttatag 163843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 5837 - 5716
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    ||||| |||| ||||| |||| |||||||  | ||||||| | |||||| |||||||  |||  ||||||| | ||||||| | ||| |||||||||| |    
T  5837 gagaaaaaaagaatagctcgtcaacacaagctgaaggagggagaagagagaaaagttctttgacaactcaagaaaactttttgtgtgtgtataagtgagg 5738  T
Q  106 aatgagagctctatttataggt 127  Q
    ||||||| || |||||||||||    
T  5737 aatgagaactttatttataggt 5716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 39672 - 39799
Alignment:
Q  6 gagaagaaaataatagatcgttaacacaatttaaaggaggtaaaagagataaaagttaattgttaactcaaaagaacttttggggtgagtataagtgaag 105  Q
    |||||||||||||||| |||| |||||||  ||||   || | |||||| |||||||  |||  ||||||| ||||||||||| ||| | |   |||| |    
T  39672 gagaagaaaataatagctcgtcaacacaagctaaacatgg-agaagagagaaaagttctttgacaactcaagagaacttttggtgtgtgaaattgtgagg 39770  T
Q  106 aatgagagctctatttataggtgaggagg 134  Q
    |||||| ||||||||||||||||||||||    
T  39771 aatgagggctctatttataggtgaggagg 39799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 4882 - 4915
Alignment:
Q  94 gtataagtgaagaatgagagctctatttataggt 127  Q
    |||||||||| |||||||||||||||||||||||    
T  4882 gtataagtgaggaatgagagctctatttataggt 4915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 134
Target Start/End: Original strand, 86249 - 86278
Alignment:
Q  105 gaatgagagctctatttataggtgaggagg 134  Q
    ||||||||||||||||||||||||||||||    
T  86249 gaatgagagctctatttataggtgaggagg 86278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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