View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_2 (Length: 657)
Name: NF19874_low_2
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Original strand, 46525955 - 46526440
Alignment:
| Q |
8 |
aagaatatcttgatgacatgaaagcaggccccacaccatacccccc-acaaataataaacaatagcagcactgcacgagctgaatttctctcgtgcacaa |
106 |
Q |
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| T |
46525955 |
aagaatatcttgatgacatgaaatcaggccccacaccatacccccccacaaataataaacaatagcagcactgcacgagctgaatttctctcgtgcacaa |
46526054 |
T |
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| Q |
107 |
catctttgcctcacttattataatttatatactgtatatgtgtgtgtgaga----------gagagagcgagctcatgcaactatgaaattatttctcaa |
196 |
Q |
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| T |
46526055 |
catctttgcctcacttattataatttatataatgtatatgtgtgtgtgagagagagagagagagagagcgagctcatggaactatgaaattatttctcaa |
46526154 |
T |
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| Q |
197 |
ggaaaagtggtagcagtgaggagaaagtttatattattatgcccataaaaaagaaagagtggtaagtcatacacactgacacacaattccaatacgcaac |
296 |
Q |
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| T |
46526155 |
ggaaaagtggtagcagtgaggagaaagtttatattattatgcccataaaaaagaaagagttgtaagtcatacacactgacacacaattccaatacgcaac |
46526254 |
T |
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| Q |
297 |
aatgttaatgttcgttcattaattacatttttatactatattgttagtttcttgttatttgcatgtaatgcattgcatgtcactttattttcctcccatc |
396 |
Q |
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| T |
46526255 |
aatgtcaatgttcgttcattaattacatttttatactatattgttagtttcttgttatttgcatgtaatgcattgcatgtcactttattttcctcccatc |
46526354 |
T |
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| Q |
397 |
ttttcaatctcagactcagagaatgtacagcgcctagtacaagatgaaatgaaataaaattcttccaagatttgataccatatacc |
482 |
Q |
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| T |
46526355 |
ttttcaatctcagactcagagaatgtacagcgcctagtacaagatgaaatgaaataaaattctgccaagatttgataccatatacc |
46526440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 591 - 641
Target Start/End: Original strand, 46526555 - 46526605
Alignment:
| Q |
591 |
agaaccattgcatgagatttgtaatggttttgagtagaaaaaataactttg |
641 |
Q |
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| T |
46526555 |
agaaccattgcatgagatttgtaatggttttgagtagaaaaaataactttg |
46526605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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