View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_20 (Length: 310)
Name: NF19874_low_20
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 30 - 288
Target Start/End: Original strand, 3299828 - 3300086
Alignment:
| Q |
30 |
gaaacttaataataatctctctcctagaatcactaaaaaagaaggtgagagggaatgattttagttaagaaaaaaccggagaagatatatcatatcatag |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3299828 |
gaaacttaataataatctctctcctagaatcactaaaaaagaaggtgagagggaatgattttagttaagaaaaaaccggagaagatatatcatatcatag |
3299927 |
T |
|
| Q |
130 |
cataagcatagcataggtttaggtatcattattattatactataaaattcgttatacggtcacaacaacattctgaattcaattctgattctgatagtga |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3299928 |
cataagcatagcataggtttaggtatcattattattatactataaaattcgttatacggtcacaacaacattctgaattcaattctgattctgatagtga |
3300027 |
T |
|
| Q |
230 |
tacaacgacctttgtggctctctgcccactgctctctgccaccccaccaccatcctgtt |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3300028 |
tacaacgacctttgtggctctctgcccactgctctctgccaccccaccaccatcctgtt |
3300086 |
T |
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