View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_23 (Length: 304)
Name: NF19874_low_23
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 15 - 298
Target Start/End: Complemental strand, 8741126 - 8740843
Alignment:
| Q |
15 |
tatcatcctgtttgtgacctttgatattggttttacagcagtgtgacaatcgtcacatatccgaaggtttttaattacgcggatgggtgccagaaatggt |
114 |
Q |
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| T |
8741126 |
tatcatcctgtttgtgacctttgatattggttttacagcagtgtgacaatcgtcacatatccgaaggtttttaattacgcggatgggtgccagaaatggt |
8741027 |
T |
|
| Q |
115 |
gtcttcatgaggccatatgttatggcaagcttctcgctatgataattaagataactttccttctgctcatcttccacattgtgcaacacagcttcaatat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8741026 |
gtcttcatgaggccatatgttatggcaagcttctcgctatgataattaagataactttccttctgctcatcttccacattgtgcaacacagcttcaatat |
8740927 |
T |
|
| Q |
215 |
tcggcacatatcccatttgcttaatcatttccagttatagttgaaccttgttgtaaatctgaatacactctggatgattgcttt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8740926 |
tcggcacatatcccatttgcttaatcatttccagttatagttgaaccttgttctaaatctgaatacactctggatgattgcttt |
8740843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 15 - 298
Target Start/End: Original strand, 10479719 - 10480002
Alignment:
| Q |
15 |
tatcatcctgtttgtgacctttgatattggttttacagcagtgtgacaatcgtcacatatccgaaggtttttaattacgcggatgggtgccagaaatggt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10479719 |
tatcatcctgtttgtgacctttgatattggttttacagcagtgtgacaatcgtcacatatccgaaggtttttaattacgcggatgggtgccagaaatggt |
10479818 |
T |
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| Q |
115 |
gtcttcatgaggccatatgttatggcaagcttctcgctatgataattaagataactttccttctgctcatcttccacattgtgcaacacagcttcaatat |
214 |
Q |
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| T |
10479819 |
gtcttcatgaggccatatgttatggcaagcttctcgctatgataattaagataactttccttctgctcatcttccacattgtgcaacacagcttcaatat |
10479918 |
T |
|
| Q |
215 |
tcggcacatatcccatttgcttaatcatttccagttatagttgaaccttgttgtaaatctgaatacactctggatgattgcttt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10479919 |
tcggcacatatcccatttgcttaatcatttccagttatagttgaaccttgttctaaatctgaatacactctggatgattgcttt |
10480002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 15 - 297
Target Start/End: Original strand, 2859027 - 2859309
Alignment:
| Q |
15 |
tatcatcctgtttgtgacctttgatattggttttacagcagtgtgacaatcgtcacatatccgaaggtttttaattacgcggatgggtgccagaaatggt |
114 |
Q |
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||||| |||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| || | ||| |
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| T |
2859027 |
tatcaacctgtttgtgacctttgatattagttttacagctgtgtgacaatcttcacatatccgaaggtttttaattacgcggatgggtgccggagaaggt |
2859126 |
T |
|
| Q |
115 |
gtcttcatgaggccatatgttatggcaagcttctcgctatgataattaagataactttccttctgctcatcttccacattgtgcaacacagcttcaatat |
214 |
Q |
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| |||||||||||||||| |||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||| |
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| T |
2859127 |
attttcatgaggccatatgctatggccagcttctcgctgtggtaattaagatagctttccttctgttcatcttccacatcatgcagcacggcttcaatat |
2859226 |
T |
|
| Q |
215 |
tcggcacatatcccatttgcttaatcatttccagttatagttgaaccttgttgtaaatctgaatacactctggatgattgctt |
297 |
Q |
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|||||||||| |||| |||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2859227 |
tcggcacataccccagttgcttaatcatttccagcaatagctgaaccttgttgtaaatttgaatacactctggatgattgctt |
2859309 |
T |
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