View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_24 (Length: 296)
Name: NF19874_low_24
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 11697341 - 11697605
Alignment:
| Q |
16 |
attagccgaaagaaacttggtacaaacacccgggtttagtttaattgaagcaaagaggaaagtgtacaagtttgtttcacaagacaagtctatacctcaa |
115 |
Q |
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| T |
11697341 |
attagccgaaagaaacttggtacaaacacccgggtttagtttaattgaagcaaagaggaaagtgtacaagtttgtttcacaagacaagtctatacctcaa |
11697440 |
T |
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| Q |
116 |
tggaacataatctatgagatgattcaccaaatggaatggcagttgaaatttgaagggtacataccagatacatcacaagttttgctcgatgtagacgatg |
215 |
Q |
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| T |
11697441 |
tggaacataatctatgagatgattcaccaaatggaatggcagttgaaatttgaagggtacataccagatacatcacaagttttgctcgatgtagacgatg |
11697540 |
T |
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| Q |
216 |
aagaaaagaaagagagattgaaatttcatagtcagaagttagcaattgcttttggactcatacat |
280 |
Q |
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| T |
11697541 |
aagaaaagaaagagagattgaaatttcatagtcagaagttagcaattgcttttggactcatacat |
11697605 |
T |
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