View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_26 (Length: 285)
Name: NF19874_low_26
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 22839678 - 22839403
Alignment:
| Q |
1 |
atatatagttaaaatattatgtttcctttaaattgtgttgtgtttatacatgtagtaagtacttctatttccgaacacgatttaagcacttattttaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
22839678 |
atatatagttaaaatattatgtttcctttaaattgtgttgtgtttatacatgtagtaagtacttccatttcagaacacgatttaagcacttattttaaaa |
22839579 |
T |
|
| Q |
101 |
atttaacgatagtttgtggctcttgcaatcttcacaaatggatgtcatgacctgcttaagttaaaaatgtgtattacttgaaacaaattagctttagtaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22839578 |
atttaacgatagtttgtggctcttgcaatcttcacaaatggatgtcatgacctgcttaagttaaaaatgtgtattacttgaaaagaattagctttagtaa |
22839479 |
T |
|
| Q |
201 |
tgcctagttactgatggagtccatgtgtgttgtagtgaggagttttgtatggattgaaccttactgctgtgatatt |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22839478 |
tgcctagttactgatggagtccatgtgtgttgtagtgaggagttttgtatggattgaaccttactgctgtgatatt |
22839403 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 45623139 - 45623216
Alignment:
| Q |
29 |
taaattgtgttgtgtttatacatgtagtaagtacttctatttccgaacacgatttaagcacttattttaaaaatttaa |
106 |
Q |
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|||||||||||| ||||||||||||||| ||||||| |||| |||||||||||||| |||| |||| |||| |||| |
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| T |
45623139 |
taaattgtgttgcatttatacatgtagtacgtacttcaattttagaacacgatttaagtacttctttttaaaagttaa |
45623216 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 22604636 - 22604729
Alignment:
| Q |
8 |
gttaaaatattatgtttcctttaaattgtgttgtgtttatacatgtagtaagtacttctatttccgaacacgatttaagcacttattttaaaaa |
101 |
Q |
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|||||||||| ||| ||| |||||||||||| ||||||||||||||| ||| ||| |||| |||||||||||||| |||| |||| |||| |
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| T |
22604636 |
gttaaaatatgttgtggcctataaattgtgttgcatttatacatgtagtacgtatttcaattttagaacacgatttaagtacttctttttaaaa |
22604729 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 15213205 - 15213147
Alignment:
| Q |
43 |
tttatacatgtagtaagtacttctatttccgaacacgatttaagcacttattttaaaaa |
101 |
Q |
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||||||||||||||||||||||| |||| |||||| ||||||| |||| |||| |||| |
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| T |
15213205 |
tttatacatgtagtaagtacttcaattttagaacacaatttaagtacttctttttaaaa |
15213147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 15252424 - 15252366
Alignment:
| Q |
43 |
tttatacatgtagtaagtacttctatttccgaacacgatttaagcacttattttaaaaa |
101 |
Q |
| |
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||||||||||||||||||||||| |||| |||||| ||||||| |||| |||| |||| |
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|
| T |
15252424 |
tttatacatgtagtaagtacttcaattttagaacacaatttaagtacttctttttaaaa |
15252366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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