View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_27 (Length: 275)
Name: NF19874_low_27
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 26528393 - 26528125
Alignment:
| Q |
1 |
tctttccacaattccattttcttgcatacccttttcattacaatgtccatatcttgtgaaaaattaagttctttctcttcctccttaatgagatcataaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26528393 |
tctttccacaattccattttcttgcatacccttttcattacaatgtccatatcttgtgaaaaattaagttctttctcttcctccttaatgagatcataaa |
26528294 |
T |
|
| Q |
101 |
ctagtctcttgagaactttttggtcttgccatctttcatgaacacttggatggcaaaggatttcatgaactatttctctcaatgccttctcttcatttga |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26528293 |
ctagtctcttgaaaactttttggtcttgccatctttcatgaacacttggatggcaaaggatttcatgaactatttctctcaatgccttctcttcacttga |
26528194 |
T |
|
| Q |
201 |
tgcttcaatttcatcttcttcataatcatcgtcttcgaatgctttgttgtcttcttgcattcttctctc |
269 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
26528193 |
tgcttcactttcatcttcttcataatcatcgtcttcgaatgcttcgttgtcttcttgcattcttttctc |
26528125 |
T |
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