View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_3 (Length: 578)
Name: NF19874_low_3
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Original strand, 56313467 - 56314025
Alignment:
| Q |
1 |
tcatcaagaggtactactgcttcacattcagacaagaataagcagcaaaatgaaaaaatattgggaatgggatttgttgttggacaatcaccaaagacaa |
100 |
Q |
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| T |
56313467 |
tcatcaagaggtactactgcttcacattcagacaagaataagcagcaaaatgaaa---tattgggaatgggatttgttgttggacaatcaccaaagacaa |
56313563 |
T |
|
| Q |
101 |
ttgatgatcacatagttaacaaaatggaaggaagcagtagcggcggtaattcagatcatgtcacaacaactcttgggctttccaagtatagcaatactcc |
200 |
Q |
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| T |
56313564 |
ttgatgatcacatagttaacaaaatggaaggaagcagtagcggcggtaattcagatcatgtcacaacaactcttgggctttccaagtatagcaatactcc |
56313663 |
T |
|
| Q |
201 |
tcctcctactaattaccgttcagaagaggaagaaggattgatgatgat---gcagcagcagcatcaacctaggcacctagtacaatatgctgctgcggga |
297 |
Q |
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| T |
56313664 |
tcctcctactaattaccgttcagaagaagaagaaggattgatgattatgcagcagcagcagcatcaacctaggcacctagtacaatattcagctgcggga |
56313763 |
T |
|
| Q |
298 |
aactctctgttagtctccgcttgtggtggcggcgggggcgccattttccctgtctcagcttnnnnnnnnnnnnnnnnntcagtgagctgttccaatactg |
397 |
Q |
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| T |
56313764 |
aactctctgttagtctccgc---tggtggcggcgggggcgtcattttccctgtctcagcttcagcagcagcag------cagtgagctgttccaatactg |
56313854 |
T |
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| Q |
398 |
ctaccagtgctgcaatgatgatggatgatctcaataggcttgtaagttatcaacaacagcaatattgttacaatgttcaaaacccacatctcaatcatcc |
497 |
Q |
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| T |
56313855 |
ctaccagtgctgcaatgatgatggatgatctcaataggcttgtaagttatcaacaacagcaatattgttacaatgttcaaaacccacatctcaatcatcc |
56313954 |
T |
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| Q |
498 |
aaatccgaatcatttgtctacattgctgatgcaaccgatgttaccaaatcaatttccaactaccttctctg |
568 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
56313955 |
aaatccgaatcatttgtctacattgctgatgcaaccaatgttaccaaatcaatttccaactaccttctctg |
56314025 |
T |
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