View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_33 (Length: 246)
Name: NF19874_low_33
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 16738613 - 16738378
Alignment:
| Q |
1 |
caaagattaagctttctagaagaccaaataaaaaacatctaaaagaaccatcgcatgcagaaatagtcactcattataaatgatcaaggctttaagctac |
100 |
Q |
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| T |
16738613 |
caaagattaagctttctagaagaccaaataaaaaacatctaaaagaaccatcacatgcagaaatagtcactcattataaatgatcaaggctttaagctac |
16738514 |
T |
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| Q |
101 |
ttcctacaacctaaatttaatagcaaatttggtaattcatttgaagggaagaacgttggtgaaaacaagagtcaagggatctaaacaaagtacccatcat |
200 |
Q |
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| T |
16738513 |
ttcctacaacctaaatttaatagcaaatttggtaa-tcatctgaagggaagaacgttggtgaaaacaagagtcaaggg-tctaaacaaagtacccatcat |
16738416 |
T |
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| Q |
201 |
tcatcacggattccccttcaattattgtgcttaatttt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
16738415 |
tcatcacggattccccttcaattattgtgcttaatttt |
16738378 |
T |
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