View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_34 (Length: 242)
Name: NF19874_low_34
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_34 |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (4 HSPs) |
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| [»] chr2 (5 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 10358679 - 10358920
Alignment:
| Q |
1 |
ccaaagggataaggtatatttagatgcttaatggttaaggtaaagaccatcatatgggaaaagaccaaagagtcactaaaggataactaaggacttctac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10358679 |
ccaaagggataaggtatatttagatgcttaatggttaaggtaaagaccatcatatgggaaaagacgaaagagtcactaaaggataactaaggacttctac |
10358778 |
T |
|
| Q |
101 |
tataaaaggacaataagcgttcatttgtaagtgtgcgctaatggtgtgttgtgttttgttgaatagaatagagattgggggcaagaacctccaatcaacc |
200 |
Q |
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| | |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10358779 |
tgttaaaggacaataagccttcatttgcaagtgtgcgctaatggtgtgttgtgttttgttgaatagaatagagattgggggcaacaacctccaatcaact |
10358878 |
T |
|
| Q |
201 |
ctagccaccgtcttagagattcaaatcgcttttcttcatctc |
242 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
10358879 |
ctagccaccatcttagagattcaaatcacttttcttcatctc |
10358920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 33188908 - 33188828
Alignment:
| Q |
162 |
aatagaatagagattgggggcaagaacctccaatcaaccctagccaccgtcttagagattcaaatcgcttttcttcatctc |
242 |
Q |
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||||||||||||||||| ||| |||||| ||||||| |||| |||| ||| |||||||||||| | ||||||||||| |
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| T |
33188908 |
aatagaatagagattggaggctgcaacctctaatcaactctagacaccaactttgagattcaaatcattcttcttcatctc |
33188828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 242
Target Start/End: Original strand, 32401470 - 32401679
Alignment:
| Q |
34 |
gttaaggtaaagaccatcatatgggaaaag-accaaagagtcactaaaggataactaaggacttctactataaaaggacaataagcgttcatttgtaagt |
132 |
Q |
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||||||||||||||||||| ||||||||| || ||| | | |||| |||||| || ||||| |||||||||||||||| |||| |||||| | ||| |
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| T |
32401470 |
gttaaggtaaagaccatcacatgggaaaaatactaaaacggccctaatggataagaaatgacttttactataaaaggacaacaagccttcattggcaagg |
32401569 |
T |
|
| Q |
133 |
gtgcgctaatggtgtgttgtgttttgttgaatagaatagagattgggggcaagaacctccaatcaaccctagccaccgtcttagagattcaaatcgcttt |
232 |
Q |
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||| | || | |||||| |||| || ||||||||||| ||||| | ||||| | |||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
32401570 |
gtgtgttagcgttgtgttatgttgtgctgaatagaatatagattcgaggcaacatcctccaatcaaccctagccaccatcttagagattcaaatcacttt |
32401669 |
T |
|
| Q |
233 |
tcttcatctc |
242 |
Q |
| |
|
|||||||||| |
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| T |
32401670 |
tcttcatctc |
32401679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 18399225 - 18399116
Alignment:
| Q |
3 |
aaagggataaggtatatttagatgcttaatggttaaggtaaagaccatcatatgggaaaagaccaaagagtcactaaaggataactaaggacttctacta |
102 |
Q |
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||||||||||| |||||| |||||||| |||||||| || |||||||| |||||||||||||||| | ||||||||||||| || ||||| ||||| |
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| T |
18399225 |
aaagggataag-tatattcctatgcttaacggttaaggaaaggaccatcacatgggaaaagaccaaaatggcactaaaggataagaaaagacttgtacta |
18399127 |
T |
|
| Q |
103 |
taaaaggacaa |
113 |
Q |
| |
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|||||| |||| |
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| T |
18399126 |
taaaagaacaa |
18399116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 6239009 - 6239091
Alignment:
| Q |
160 |
tgaatagaatagagattgggggcaagaacctccaatcaaccctagccaccgtcttagagattcaaatcgcttttcttcatctc |
242 |
Q |
| |
|
|||||| |||||||||||| || || | ||||||||||||||||||||| |||||||||||||||| | ||||||||||| |
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| T |
6239009 |
tgaataaaatagagattggaggtaacatcctccaatcaaccctagccacgaacttagagattcaaatctttcttcttcatctc |
6239091 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 28284398 - 28284346
Alignment:
| Q |
190 |
tccaatcaaccctagccaccgtcttagagattcaaatcgcttttcttcatctc |
242 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||| ||||| |||||||| |
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| T |
28284398 |
tccaatcaaccctagacatcgtcttagagattcaaattacttttattcatctc |
28284346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 38714827 - 38714928
Alignment:
| Q |
142 |
tggtgtgttgtgttttgttgaatagaatagagattgggggcaagaacctccaatcaaccctagccaccgtcttagagattcaaatcgc-ttttcttcatc |
240 |
Q |
| |
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||||| |||||||| | ||||||||||||||||||| ||||| |||||| | ||||||||||||||| ||||||| ||||||||||| ||||||||||| |
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| T |
38714827 |
tggtgagttgtgttccgctgaatagaatagagattggaggcaacaacctcgattcaaccctagccaccatcttagaaattcaaatcgctttttcttcatc |
38714926 |
T |
|
| Q |
241 |
tc |
242 |
Q |
| |
|
|| |
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|
| T |
38714927 |
tc |
38714928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 38714564 - 38714645
Alignment:
| Q |
162 |
aatagaatagagattgggggcaagaacctccaatcaaccctagccaccgtcttagagattcaaatcgc-ttttcttcatctc |
242 |
Q |
| |
|
|||||||||||||||| ||||| |||||| | ||||||||||||||| ||||||| ||||||||| | ||||||||||||| |
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| T |
38714564 |
aatagaatagagattgcaggcaacaacctcgattcaaccctagccaccatcttagaaattcaaatcactttttcttcatctc |
38714645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 14918762 - 14918662
Alignment:
| Q |
10 |
taaggtatatttagatgcttaatggttaaggtaaagaccatcatatgggaaaagaccaaaga-gtcactaaaggataactaaggacttctactataaaag |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| | | |||| ||||||| || ||||| ||||||||||| |
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|
| T |
14918762 |
taaggtatattcttatgcttaatggttaaggcaaagaccatcacatgggaaaagaccaaaaaggacactcaaggataggaaatgacttgtactataaaag |
14918663 |
T |
|
| Q |
109 |
g |
109 |
Q |
| |
|
| |
|
|
| T |
14918662 |
g |
14918662 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 42296828 - 42296707
Alignment:
| Q |
6 |
gggataaggtatatttagatgcttaatggttaaggtaaagaccatcatatgggaaaagaccaaagagtcactaaaggataactaaggacttctactataa |
105 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | |||||||| ||| ||| ||||||| | |||||||||||| |||||||| ||| |||| |
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| T |
42296828 |
gggataaggtatattcttctgcttaatggttaagaaacagaccatcgcttggaaaatgaccaaaatgatactaaaggataagaaaggacttgtaccataa |
42296729 |
T |
|
| Q |
106 |
aaggacaataagcgttcatttg |
127 |
Q |
| |
|
|||||||| |||| |||||||| |
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| T |
42296728 |
aaggacaacaagccttcatttg |
42296707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 42296656 - 42296602
Alignment:
| Q |
188 |
cctccaatcaaccctagccaccgtcttagagattcaaatcgcttttcttcatctc |
242 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||| | ||||||||||| |
|
|
| T |
42296656 |
cctccaatcaactctagccaccaacttagagattcaaatcattcttcttcatctc |
42296602 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 29179833 - 29179772
Alignment:
| Q |
181 |
gcaagaacctccaatcaaccctagccaccgtcttagagattcaaatcgcttttcttcatctc |
242 |
Q |
| |
|
|||| ||||| |||||||| ||||||| | ||||||||||||||||| |||||||||||||| |
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|
| T |
29179833 |
gcaacaaccttcaatcaactctagccatcatcttagagattcaaatcacttttcttcatctc |
29179772 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 27424822 - 27424742
Alignment:
| Q |
162 |
aatagaatagagattgggggcaagaacctccaatcaaccctagccaccgtctt-agagattcaaatcgcttttcttcatctc |
242 |
Q |
| |
|
||||||||||||||||| |||| || |||||||| ||||||||||| | |||| || ||||||||| |||||||||||||| |
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|
| T |
27424822 |
aatagaatagagattggaggca-gagcctccaataaaccctagccagcatctttagggattcaaattacttttcttcatctc |
27424742 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 227
Target Start/End: Complemental strand, 44347929 - 44347802
Alignment:
| Q |
100 |
ctataaaaggacaataagcgttcatttgtaagtgtgcgctaatggtgtgttgtgttttgttgaatagaatagagattgggggcaagaacctccaatcaac |
199 |
Q |
| |
|
|||||||| ||||| |||| || | ||| ||| ||| |||| ||||||| | || | || ||||||||||| ||||||| || | | |||||||||||| |
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|
| T |
44347929 |
ctataaaaagacaacaagccttgagttgcaagagtgtgctagtggtgtggtttggtgtgctgaatagaatatagattggaggtagcagcctccaatcaac |
44347830 |
T |
|
| Q |
200 |
cctagccaccgtcttagagattcaaatc |
227 |
Q |
| |
|
||| ||| || |||||||||||||||| |
|
|
| T |
44347829 |
cctggccccctccttagagattcaaatc |
44347802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 35944760 - 35944826
Alignment:
| Q |
162 |
aatagaatagagattgggggcaagaacctccaatcaaccctagccaccgtc-ttagagattcaaatc |
227 |
Q |
| |
|
||||||||||||||||| ||| | |||||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
35944760 |
aatagaatagagattggaggctactgcctccaatcaaccctaaccaccgtctttggagattcaaatc |
35944826 |
T |
|
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