View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_35 (Length: 241)
Name: NF19874_low_35
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_35 |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 39711961 - 39712184
Alignment:
| Q |
18 |
acatcaaacttaggtgacccatgcagaaacaattgatttccagacatatacatagttttacttaattcaaaccagtcttctaattttttaagaggttcat |
117 |
Q |
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| T |
39711961 |
acattaaacttaggtgacccatgcagaaacaattgatttccagacatatacatagttttacttaattcaaaccagtcttctaattttttaagaggttcat |
39712060 |
T |
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| Q |
118 |
tttttatctcattaacagccttttcaattaccttaacaacatcaacaaaactatttattcccttcatatcctttctcttcatggttgcacttttagacac |
217 |
Q |
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| T |
39712061 |
tttttatctcattaacagccttttcaattaccttaacaacatcaacaaaactatctattcccttcatatcctttctcttcatggttgcacttttagacac |
39712160 |
T |
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| Q |
218 |
tacacagttcccaaaatacccctc |
241 |
Q |
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| T |
39712161 |
tacacagttcccaaaatacccctc |
39712184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 104 - 241
Target Start/End: Original strand, 11527669 - 11527806
Alignment:
| Q |
104 |
tttaagaggttcattttttatctcattaacagccttttcaattaccttaacaacatcaacaaaactatttattcccttcatatcctttctcttcatggtt |
203 |
Q |
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| T |
11527669 |
tttaagaggttcattttttacctcagcaacaaccttttcaattaccttaacgacatcaacaaaactattttctcctttcatatcctttctcttcattgtt |
11527768 |
T |
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| Q |
204 |
gcacttttagacactacacagttcccaaaatacccctc |
241 |
Q |
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| T |
11527769 |
gcacttttagacactaaacagttcccaaaatacccctc |
11527806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 241
Target Start/End: Complemental strand, 37953197 - 37953060
Alignment:
| Q |
104 |
tttaagaggttcattttttatctcattaacagccttttcaattaccttaacaacatcaacaaaactatttattcccttcatatcctttctcttcatggtt |
203 |
Q |
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| T |
37953197 |
tttaagaggttcatttttcatctcagttattgccttctcaattaccttaacagcattcacaaaaccatcttctcctttcacatctcttctcttcatcgtt |
37953098 |
T |
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| Q |
204 |
gcacttttagacactacacagttcccaaaatacccctc |
241 |
Q |
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| T |
37953097 |
gcatgattaaacgctaaacagtttccgaaatacccctc |
37953060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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