View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_4 (Length: 574)
Name: NF19874_low_4
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 14 - 556
Target Start/End: Original strand, 46730408 - 46730950
Alignment:
| Q |
14 |
caaaggggttgtcaatcccaaggcacgagttgcaaaggttacacagctttcttcaatgttgccggtagtttcccctacctaaccaaatatagaaaagaat |
113 |
Q |
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| T |
46730408 |
caaaggggttgtcaatcccaaggcacgagttgcaaaggttacacagctttcttcaatgttgccagtagtttcccctacctaaccaaatatagaaaagaat |
46730507 |
T |
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| Q |
114 |
acattgcacggaaaatttaggcaataaactaattaataatgtagacatatcaataaacttcatcacaagtcatacagaatattaaattacttcagattac |
213 |
Q |
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| T |
46730508 |
acattgcacggaaaatttaggcaataaactaattaataatgtagacatatcaataaacttcatcacaagtcatgcagaatattaaattacttcagattac |
46730607 |
T |
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| Q |
214 |
aaatttaacgctgtgtctcattcaaaactagtaagcatactacatagatgctgctcnnnnnnnttctccacctactgagcatcaagcctacaaacaatca |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46730608 |
aaatttaacgctgtgtctcattcaaaactagtaagcatacttcatagatgctgctcaaaaaaattctccacctactgagcatcaagcctacaaacaatca |
46730707 |
T |
|
| Q |
314 |
tttttgagattgatatatctttacttaacagtgttctacaaaaccattattgcttgataaggacttgacctcaacgcctatcaaaagatgggggaacctg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46730708 |
tttttgagattgatatatctttacttaacagtgttctacaaaaccattattgcttgataaggacttgacctcaacgcctatcaaaagatggaggaacctg |
46730807 |
T |
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| Q |
414 |
gtattgggattcggaatacacattataaatctcacctactctgtaaaaacagaaacaatgatgttggacacacggcaatagcccttcagataacaatttt |
513 |
Q |
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| T |
46730808 |
gtattgggattcggaatacacattataaatctcacctactctgtaaaaacagaaacaatgatgttggacacacggcaatagcccttcagataacaatttt |
46730907 |
T |
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| Q |
514 |
cactccatgtagaaattgcgattggatacaaaaattacaggag |
556 |
Q |
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| T |
46730908 |
cactcgatgtagaaattgtgattgggtacaaaaattacaggag |
46730950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 7926563 - 7926623
Alignment:
| Q |
14 |
caaaggggttgtcaatcccaaggcacgagttgcaaaggttacacagctttcttcaatgttg |
74 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
7926563 |
caaaggtgttgtcaatcccaaggcacgagttgcaaaggttgcacaactttcttcaatgttg |
7926623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 379
Target Start/End: Original strand, 7926811 - 7926912
Alignment:
| Q |
278 |
tctccacctactgagcatcaagcctacaaacaatcatttttgagattgatatatctttacttaacagtgttctacaaaaccattattgcttgataaggac |
377 |
Q |
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|||||| ||||||| ||||||||| |||| || | | ||||||||| | ||||||||| ||||||| | | ||| ||| |||||||||||||||||| |
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| T |
7926811 |
tctccatctactgaacatcaagccccaaaacgataaatcttgagattgctctatctttacgtaacagtaatttgcaataccgttattgcttgataaggac |
7926910 |
T |
|
| Q |
378 |
tt |
379 |
Q |
| |
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|| |
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|
| T |
7926911 |
tt |
7926912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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