View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_40 (Length: 237)
Name: NF19874_low_40
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_40 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 25947550 - 25947345
Alignment:
| Q |
15 |
cacagacacataacagtaccaaaataaaaggaagcaaaatttggcattattgtttaagacgaagctgatgccaatttatggatgcctaaaaatcccggat |
114 |
Q |
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|||| ||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25947550 |
cacaaacacataacagtaccaaaacaaaaggaagtaaaatttggcattatagtttaagacgaagctgatgccaatttatggatgcctaaaaatcttggat |
25947451 |
T |
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| Q |
115 |
acccactacaataagaagccgaggtccaaaaaacggaaatgccgtaaaatccaagcaagctcgaggtcgaggcagcatgacagacaaaagtttgtcgtag |
214 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
25947450 |
acccactaccataagaagccgaggtccaaaaaacggaaatgctgtaaaatccaagcaagctcgaagtcgaggcagcatgacagacaaaagtttgtcatag |
25947351 |
T |
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| Q |
215 |
aatagt |
220 |
Q |
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|||||| |
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| T |
25947350 |
aatagt |
25947345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 20245505 - 20245414
Alignment:
| Q |
15 |
cacagacacataacagtaccaaaataaaaggaagcaaaatttggcattattgtttaagacgaagctgatgccaatttatggatgcctaaaaa |
106 |
Q |
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|||| |||||||||| |||||||| |||||||||||||| |||||||||| |||||||| ||| ||||||||| || |||||| |||||| |
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| T |
20245505 |
cacaaacacataacaataccaaaacaaaaggaagcaaaagttggcattatactttaagacaaagttgatgccaagctacggatgcttaaaaa |
20245414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 22139489 - 22139398
Alignment:
| Q |
15 |
cacagacacataacagtaccaaaataaaaggaagcaaaatttggcattattgtttaagacgaagctgatgccaatttatggatgcctaaaaa |
106 |
Q |
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| T |
22139489 |
cacaaacacataacaataccaaaacaaaaggaagcaaaagttggcattatactttaagacaaagttgatgccaagctacggatgcttaaaaa |
22139398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 920060 - 920138
Alignment:
| Q |
136 |
aggtccaaaaaacggaaatgccgtaaaatccaagcaagctcgaggtcgaggcagcatgacagacaaaagtttgtcgtag |
214 |
Q |
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| T |
920060 |
aggtccaaaaaacgaaaatgccgtaaaaaccaagcaagctcgaggtcaaggcggcatgacagacagaagtttgtcgtag |
920138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 919942 - 920022
Alignment:
| Q |
22 |
acataacagtaccaaaataaaaggaagcaaaatttggcattattgtttaagacgaagctgatgccaatttatggatgccta |
102 |
Q |
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||||||||||||||| | |||||||||||||| |||||||||| | ||| || || || |||||||||||||||||||| |
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| T |
919942 |
acataacagtaccaagacaaaaggaagcaaaagttggcattataatgtaaaacaaaattgttgccaatttatggatgccta |
920022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 63034 - 62944
Alignment:
| Q |
130 |
aagccgaggtccaaaaaacggaaatgccgtaaaatccaagcaagctcgaggtcgaggcagcatgacagacaaaagtttgtcgtagaatagt |
220 |
Q |
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||||| || |||| |||||| ||||| ||||||| ||||||||| || |||||| |||||| ||||||||||||||||||| ||||| |
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| T |
63034 |
aagccaagatccataaaacgaaaatgtcgtaaaaaccaagcaagttcagggtcgatatggcatgagagacaaaagtttgtcgtaggatagt |
62944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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