View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_43 (Length: 233)
Name: NF19874_low_43
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 41518124 - 41517919
Alignment:
| Q |
14 |
aatatcaataactgaggagcccaacctttaatcactaggcctctaccattgattctttcctcaaatccactttcctcaatccattttttcaattcttcta |
113 |
Q |
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| T |
41518124 |
aatatcaataactgaggagcccaacctttaatcactaggcctctaccattgattctttcctcaaatccactttcctcaatccattttttcaattcttcta |
41518025 |
T |
|
| Q |
114 |
attcatttccttctcttaaaacccaaataaaaggtatttttgttgcttctaatgctaaaccaagttctatcaactgtagtggtgttatattgcataaact |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41518024 |
attcatttccttctcttaaaacccaaataaaaggtatttttgttgcttctaatgctaaaccaagttctatcaactgtaatggtgttatattgcataaact |
41517925 |
T |
|
| Q |
214 |
tccaag |
219 |
Q |
| |
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|||||| |
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| T |
41517924 |
tccaag |
41517919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 41537103 - 41536899
Alignment:
| Q |
14 |
aatatcaataactgaggagcccaacctttaatcactaggcctctaccattgattctttcctcaaatccactttcctcaatccattttttcaattcttcta |
113 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||||| |
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| T |
41537103 |
aatatcaataactgaggagcccaacccttaatcactaggcctctaccattgattcttccctcaaatccactctcctcaagccattttttcaactcttcta |
41537004 |
T |
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| Q |
114 |
attcatttccttctcttaaaacccaaataaaaggtatttttgttgcttctaatgctaaaccaagttctatcaactgtagtggtgttatattgcataaact |
213 |
Q |
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| | ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||| |
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| T |
41537003 |
actgatttccttctcttaaaacccaaataaagggtctttttgttgcttctaatgctaaaccaagctctatcaactgtggtggtgttaaattgcataaact |
41536904 |
T |
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| Q |
214 |
tccaa |
218 |
Q |
| |
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|||| |
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| T |
41536903 |
gccaa |
41536899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 8136583 - 8136785
Alignment:
| Q |
17 |
atcaataactgaggagcccaacctttaatcactaggcctctaccattgattctttcctcaaatccactttcctcaatccattttttcaattcttctaatt |
116 |
Q |
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|||||||||||||| |||||||| ||||| |||| ||||||| ||||||||||| ||||||||||||| |||||||||||||||| ||| |||||||| | |
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| T |
8136583 |
atcaataactgaggggcccaacccttaattactaagcctctatcattgattcttccctcaaatccactctcctcaatccatttttccaactcttctaact |
8136682 |
T |
|
| Q |
117 |
catttccttctcttaaaacccaaataaaaggtatttttgttgcttctaatgctaaaccaagttctatcaactgtagtggtgttatattgcataaacttcc |
216 |
Q |
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|||||| ||||| | |||||||||||||||| |||||||||||||||||||||| || || |||||||||||||||| ||||| ||| ||||||||||| |
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| T |
8136683 |
gatttccctctctaataacccaaataaaaggtttttttgttgcttctaatgctaaccctagctctatcaactgtagtgatgttaaattacataaacttcc |
8136782 |
T |
|
| Q |
217 |
aag |
219 |
Q |
| |
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||| |
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| T |
8136783 |
aag |
8136785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 14220769 - 14220842
Alignment:
| Q |
144 |
aaggtatttttgttgcttctaatgctaaaccaagttctatcaactgtagtggtgttatattgcataaacttcca |
217 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| ||||||||| |
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| T |
14220769 |
aaggtctttttgttgcttctaatgctaaaccaagtttcatcaactgtggtggtgttatatcgcagaaacttcca |
14220842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 27229859 - 27229975
Alignment:
| Q |
103 |
caattcttctaattcatttccttctcttaaaacccaaataaaaggtatttttgttgcttctaatgctaaaccaagttctatcaactgtagtggtgttata |
202 |
Q |
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|||||| | ||||| ||||||||| || | |||||||||||||||| | |||| ||||| ||| | |||||||| |||||||| || | | ||||| | |
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| T |
27229859 |
caattcatgtaattgatttccttccctaataacccaaataaaaggtctatttgaagcttcaaatcccaaaccaagctctatcaattgaactaatgttaga |
27229958 |
T |
|
| Q |
203 |
ttgcataaacttccaag |
219 |
Q |
| |
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|| |||| ||||||||| |
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| T |
27229959 |
ttacatatacttccaag |
27229975 |
T |
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