View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19874_low_46 (Length: 229)
Name: NF19874_low_46
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_46 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 22839894 - 22839672
Alignment:
| Q |
7 |
ttcattgcattagtaccttcagcataagctaaagcaatctgcaacataaaaatcacaagataaaaacccgagtaaatgaaatgattaaaattagttggaa |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22839894 |
ttcattgcatcagtaccttcagcataagctaaagcaatctgcaacataaaaatcacaagataaaaacccgagtaaatgaaatgattaaaattagttggaa |
22839795 |
T |
|
| Q |
107 |
ctttttcaatagctaattagttggaacttggaaagatgcaagnnnnnnnnnnctatgcatgtgtgatgaatgattaaaatttgaattgcttgaattaggt |
206 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22839794 |
ctttttcattagctaattagttggaacttggaaagatgcaagttttttttttctatgcatgtgtgatgaatgattaaaatttgaattgcttgaattaggt |
22839695 |
T |
|
| Q |
207 |
tgaacaatcattgaaaatatata |
229 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
22839694 |
tgaacaatcattgaaaatatata |
22839672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 27919666 - 27919587
Alignment:
| Q |
7 |
ttcattgcattagtaccttcagcataagctaaagcaatctgcaacataaaaatcacaagataaaaacccgagtaaatgaa |
86 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
27919666 |
ttcattgcatcagtaccttcagcataggctaaagcatcttgcaacttaaaaatcacaagataaaaacccgagaaaatgaa |
27919587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 22604565 - 22604627
Alignment:
| Q |
161 |
atgcatgtgtgatgaatgattaaaatttgaattgcttgaattaggttgaacaatcattgaaaat |
224 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| ||| |||||||| ||| |||||||| |
|
|
| T |
22604565 |
atgcatgtttgatgaatgattaaaatttgaa-tgcttggattgggttgaaccatctttgaaaat |
22604627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 45623050 - 45623112
Alignment:
| Q |
161 |
atgcatgtgtgatgaatgattaaaatttgaattgcttgaattaggttgaacaatcattgaaaat |
224 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| ||| |||||||| ||| |||||||| |
|
|
| T |
45623050 |
atgcatgtttgatgaatgattaaaatttgaatgccttg-attgggttgaaccatctttgaaaat |
45623112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 15213311 - 15213252
Alignment:
| Q |
164 |
catgtgtgatgaatgattaaaatttgaattgcttgaattaggttgaacaatcattgaaaat |
224 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| ||| |||||||| ||| || ||||| |
|
|
| T |
15213311 |
catgtttgatgaatgattaaaatttgaa-tgcttggattgggttgaaccatctttaaaaat |
15213252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 15252530 - 15252471
Alignment:
| Q |
164 |
catgtgtgatgaatgattaaaatttgaattgcttgaattaggttgaacaatcattgaaaat |
224 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| ||| |||||||| ||| || ||||| |
|
|
| T |
15252530 |
catgtttgatgaatgattaaaatttgaa-tgcttggattgggttgaaccatctttaaaaat |
15252471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University