View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_47 (Length: 227)
Name: NF19874_low_47
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_47 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 40122353 - 40122127
Alignment:
| Q |
1 |
acatatccaataacactcaccataaaatgatcttcgtaacttgaaatgatgatttcagttttgtttccctgagaagtaaagcaaattaaccaagatgaat |
100 |
Q |
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| T |
40122353 |
acatatccaataacactcaccataaaatgatcttcgtaacttgaaatgatgatttcagttttgtttccctgagaagtaaagcaaattaaccaagatgaat |
40122254 |
T |
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| Q |
101 |
gataatagttttgaatatcaatattaacctaatcctaatccaaatccaaacaatgaagaagaaaagagtgagaggcgcacataccttgatttcaatagag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40122253 |
gataatagttttgaatatcaatattaacctaatcctaatccaaatccaaactatgaagaagaaaagagtgagaggcgcacataccttgatttcaatagag |
40122154 |
T |
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| Q |
201 |
aaattgagttgggaaaccgggaatttt |
227 |
Q |
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||||||||||||||||| ||||||||| |
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| T |
40122153 |
aaattgagttgggaaactgggaatttt |
40122127 |
T |
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