View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_5 (Length: 499)
Name: NF19874_low_5
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 14 - 484
Target Start/End: Complemental strand, 41890497 - 41890024
Alignment:
| Q |
14 |
tgagaattatgtacagaagattatcatgtattagttgtacaagtactggctacaacagcattctactagatcaggttctgcagagttgttctgaagagga |
113 |
Q |
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| T |
41890497 |
tgagaattatgtacagaagattatcatgtattagttgtacaagtactagctacaacagcattcta---gatcaggttctgcagagttgttctgaagagga |
41890401 |
T |
|
| Q |
114 |
attcaaccgtacgaagtttaaattaaagttatgtacagtaagatatgaaagcaaacattaaattgggttccttgactgcaaaggatatattcgatatcat |
213 |
Q |
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| T |
41890400 |
attcaaccgtacgaagtttaaattaaagttatgtacagtaagatatgaaagcaaacattaaattgggttccttgactgcaaaggatatattcgatatcat |
41890301 |
T |
|
| Q |
214 |
tgtat-----ccgtgcatcggtgatcaatgcatgcatgccattgccaacagtgttgtcaaactgatttcagcttataagtctaaaataaaaacgagaatg |
308 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41890300 |
tgtattgtatccgtgcatcggtgatcaatgcatgcatgccattgccaacagtgttgtcaaactgatttcagcttataagtcaaaaataaaaacgagaatg |
41890201 |
T |
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| Q |
309 |
cagtttacttaacgagacttgattagcaatgtaacttaacgtcaaaaaactaattccatattcttccacagcaaaaagtattctatttat-aacaactaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41890200 |
cagtttacttaacgagacttgattagcaatgtaacttaacgtcaaaaaactaattccatattcttccacagcaaaaagtattctatttataaacaactaa |
41890101 |
T |
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| Q |
408 |
tttaattgaaggagggagagagaaaaatactctaattttttaaaatgtgaatgctagtatattattagtgttatgaa |
484 |
Q |
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| T |
41890100 |
tttaattgaaggagggagagagaaaaatactctaattttttgaaaggtgaatgctagtattttattagtgttatgaa |
41890024 |
T |
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