View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19874_low_6 (Length: 496)

Name: NF19874_low_6
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19874_low_6
NF19874_low_6
[»] chr7 (7 HSPs)
chr7 (15-470)||(32016356-32016825)
chr7 (19-55)||(27720467-27720503)
chr7 (26-55)||(6518104-6518133)
chr7 (24-57)||(23747400-23747433)
chr7 (19-55)||(3250027-3250063)
chr7 (15-55)||(7982293-7982333)
chr7 (19-55)||(24672798-24672834)
[»] chr1 (1 HSPs)
chr1 (18-54)||(24808440-24808476)
[»] chr3 (1 HSPs)
chr3 (325-368)||(7425062-7425105)
[»] chr8 (1 HSPs)
chr8 (17-55)||(16900876-16900914)
[»] chr4 (2 HSPs)
chr4 (15-49)||(18986938-18986972)
chr4 (22-54)||(680126-680158)
[»] chr2 (2 HSPs)
chr2 (17-55)||(1813559-1813597)
chr2 (26-54)||(41947075-41947103)
[»] chr6 (4 HSPs)
chr6 (15-44)||(20808912-20808941)
chr6 (17-54)||(29165917-29165954)
chr6 (26-54)||(27708106-27708134)
chr6 (26-54)||(27727932-27727960)
[»] scaffold0349 (1 HSPs)
scaffold0349 (26-54)||(6511-6539)


Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 470
Target Start/End: Original strand, 32016356 - 32016825
Alignment:
Q  15 cacagatcacggaaaatagtggtttgttcaaattctgctacccgttgacaacactgacttcaagtcaagaggactcttgtatcggaattgggtccttact 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  32016356 cacagatcacggaaaatagtggtttgttcaaattctgctacccgttgacaacacttacttcaagtcaagaggactcttgtattggaattgggtccttact 32016455  T
Q  115 tggcgcagaaaccttttctcttgggaggaggagtt----actaaccttatggttaggattggggattggagggtgtctcatgaggaggacaggtggaagt 210  Q
    ||||| |||||||||||| ||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32016456 tggcgtagaaaccttttcgcttgggaggaggagttagttactaaccttatggttaggattggggattggagggtgtctcatgaggaggacaggtggaagt 32016555  T
Q  211 tgagatttgaggatgatggagtcatttcggtaagctcagtgtacaaggtgttggaggggttgttaattttagaggatggtttgaatcctgtggaggaaaa 310  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  32016556 tgagatttgaggatgatggagtcatttcggtaagctcaatgtacaaggtgttggaggggttgttaattttagaggatggtttgaatccggtggaggaaga 32016655  T
Q  311 ggtgtttgattacttttggaaaagcccggccccgtcaaaagttgtggctttttcttg----------cgtgatcggattcctacgggaggaatcttgcca 400  Q
    |||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||          ||| ||||||||||||| |||| ||||||||||    
T  32016656 ggtgtttggttacctttggaaaagcccagccccgtcaaaagttgtggctttttcttggaaacttcttcgtaatcggattcctacaggagaaatcttgcca 32016755  T
Q  401 ttcagaatttattggacccgaaaagttcgaccaattgtgttttttgcgatgcttaggtagaatcttcaac 470  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32016756 ttcagaatttattggatccgaaaagttcgaccaattgtgttttttgcgatgcttcggtagaatcttcaac 32016825  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 27720503 - 27720467
Alignment:
Q  19 gatcacggaaaatagtggtttgttcaaattctgctac 55  Q
    ||||| |||||||||||||||||||||||||||||||    
T  27720503 gatcatggaaaatagtggtttgttcaaattctgctac 27720467  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 6518104 - 6518133
Alignment:
Q  26 gaaaatagtggtttgttcaaattctgctac 55  Q
    ||||||||||||||||||||||||||||||    
T  6518104 gaaaatagtggtttgttcaaattctgctac 6518133  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 23747433 - 23747400
Alignment:
Q  24 cggaaaatagtggtttgttcaaattctgctaccc 57  Q
    ||||||||||||||||||| ||||||||||||||    
T  23747433 cggaaaatagtggtttgtttaaattctgctaccc 23747400  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 3250027 - 3250063
Alignment:
Q  19 gatcacggaaaatagtggtttgttcaaattctgctac 55  Q
    |||||| |||||||||||||| |||||||||||||||    
T  3250027 gatcacagaaaatagtggtttcttcaaattctgctac 3250063  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 7982293 - 7982333
Alignment:
Q  15 cacagatcacggaaaatagtggtttgttcaaattctgctac 55  Q
    ||||||||||| |||||||||||||||||||| || |||||    
T  7982293 cacagatcacgtaaaatagtggtttgttcaaactccgctac 7982333  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 24672798 - 24672834
Alignment:
Q  19 gatcacggaaaatagtggtttgttcaaattctgctac 55  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  24672798 gatcatggaaaatagcggtttgttcaaattctgctac 24672834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 24808476 - 24808440
Alignment:
Q  18 agatcacggaaaatagtggtttgttcaaattctgcta 54  Q
    ||||||||||||| |||||||||||||||||||||||    
T  24808476 agatcacggaaaacagtggtttgttcaaattctgcta 24808440  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 368
Target Start/End: Original strand, 7425062 - 7425105
Alignment:
Q  325 tttggaaaagcccggccccgtcaaaagttgtggctttttcttgc 368  Q
    ||||||| |||||||| | |||||||||||||||||||||||||    
T  7425062 tttggaagagcccggctcggtcaaaagttgtggctttttcttgc 7425105  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 16900876 - 16900914
Alignment:
Q  17 cagatcacggaaaatagtggtttgttcaaattctgctac 55  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  16900876 cagatcacggaaaatagcggtttgctcaaattctgctac 16900914  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 18986938 - 18986972
Alignment:
Q  15 cacagatcacggaaaatagtggtttgttcaaattc 49  Q
    ||||||||||||||| |||||||||||||||||||    
T  18986938 cacagatcacggaaagtagtggtttgttcaaattc 18986972  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 680126 - 680158
Alignment:
Q  22 cacggaaaatagtggtttgttcaaattctgcta 54  Q
    ||||||||||||| |||||||||||||||||||    
T  680126 cacggaaaatagttgtttgttcaaattctgcta 680158  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 1813597 - 1813559
Alignment:
Q  17 cagatcacggaaaatagtggtttgttcaaattctgctac 55  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  1813597 cagatcacggaaaataatggtttgttcaaattccgctac 1813559  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 41947075 - 41947103
Alignment:
Q  26 gaaaatagtggtttgttcaaattctgcta 54  Q
    |||||||||||||||||||||||||||||    
T  41947075 gaaaatagtggtttgttcaaattctgcta 41947103  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 20808941 - 20808912
Alignment:
Q  15 cacagatcacggaaaatagtggtttgttca 44  Q
    ||||||||||||||||||||||||||||||    
T  20808941 cacagatcacggaaaatagtggtttgttca 20808912  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 29165954 - 29165917
Alignment:
Q  17 cagatcacggaaaatagtggtttgttcaaattctgcta 54  Q
    |||||||||||||| || ||||||||||||||||||||    
T  29165954 cagatcacggaaaacagcggtttgttcaaattctgcta 29165917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 27708106 - 27708134
Alignment:
Q  26 gaaaatagtggtttgttcaaattctgcta 54  Q
    |||||||||||||||||||||||||||||    
T  27708106 gaaaatagtggtttgttcaaattctgcta 27708134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 27727932 - 27727960
Alignment:
Q  26 gaaaatagtggtttgttcaaattctgcta 54  Q
    |||||||||||||||||||||||||||||    
T  27727932 gaaaatagtggtttgttcaaattctgcta 27727960  T

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Target: scaffold0349 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 6511 - 6539
Alignment:
Q  26 gaaaatagtggtttgttcaaattctgcta 54  Q
    |||||||||||||||||||||||||||||    
T  6511 gaaaatagtggtttgttcaaattctgcta 6539  T

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