View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_8 (Length: 447)
Name: NF19874_low_8
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_8 |
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| [»] scaffold0154 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Original strand, 54634532 - 54634948
Alignment:
| Q |
16 |
caagttgttctatcgtaagcctcctgatggtctcctcgagatctgcgacagagtttacggtactttctttctcatttttcatttccttcaattacacgct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54634532 |
caagttgttctatcgtaagcctcctgatggtctcctcgagatctgcgacagagtttacggtactttctttctcatttttcatttccttcaattacacgct |
54634631 |
T |
|
| Q |
116 |
tctcttcaaaaaaccgccaaagtttatttcttcatactattcttctgcaattcataattccagcaatattcgtttcattattatctccaaaatgtagatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54634632 |
tctcttcaaaaaaccgccaaagtttatttcttcatactattcttctgcaattcataattccagcaatattcgtttcattattatctccaaaatgtagatt |
54634731 |
T |
|
| Q |
216 |
tttgttagagaataatatattgagggaaatgctattatgtgccataaccatatcttagtatcaaagatagatagaaattatatattggaaattgtttcaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54634732 |
tttgttagagaataatatattgagggaaatgctattatgtgccataaccatatcttagtatcaaagatagatagaaattatatattggaaattgtttcaa |
54634831 |
T |
|
| Q |
316 |
tttatttctcagaaattttgaaattattttttcgcaattaatacttactatttgtagaattaactgtctaattttcaatgtcagtgtaaaactagtttac |
415 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54634832 |
tttatttctcagaattttggaaattattttttcgcaattaatacttactatttgtagaattaactgtctaattttcaatgtcagtgtaaaactagtttac |
54634931 |
T |
|
| Q |
416 |
actgacactgcgtctct |
432 |
Q |
| |
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|||||| ||| ||||| |
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| T |
54634932 |
gctgacaatgcatctct |
54634948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 375
Target Start/End: Original strand, 49026007 - 49026096
Alignment:
| Q |
286 |
atagaaattatatattggaaattgtttcaatttatttctcagaaattttgaaattattttttcgcaattaatacttactatttgtagaat |
375 |
Q |
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|||||| |||||||||||||||||| ||||||||||||| ||| || ||||||||||||| |||| ||||||| |||||||| |||| |
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| T |
49026007 |
atagaagttatatattggaaattgtgcaaatttatttctcaaaaaattgaaaattattttttctcaataaatacttgctatttgtggaat |
49026096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 375
Target Start/End: Complemental strand, 41728991 - 41728905
Alignment:
| Q |
289 |
gaaattatatattggaaattgtttcaatttatttctcagaaattttgaaattattttttcgcaattaatacttactatttgtagaat |
375 |
Q |
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|||||||| ||||||||||||| ||||||||||||||| |||||| |||| | |||||| | || ||||||| ||||||| |||| |
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| T |
41728991 |
gaaattatctattggaaattgtgtcaatttatttctcaaaaatttgaaaataaatttttcccgataaatacttgttatttgtggaat |
41728905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 322
Target Start/End: Complemental strand, 30868324 - 30868288
Alignment:
| Q |
286 |
atagaaattatatattggaaattgtttcaatttattt |
322 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||| |
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| T |
30868324 |
atagaaattacatattggaaattgtgtcaatttattt |
30868288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 370
Target Start/End: Complemental strand, 37147925 - 37147839
Alignment:
| Q |
284 |
agatagaaattatatattggaaattgtttcaatttatttctcagaaattttga-aattattttttcgcaattaatacttactatttgt |
370 |
Q |
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|||| ||||||| |||||||||||||| |||||||||||||| || |||||| ||||| ||||| |||| |||||||||||||||| |
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| T |
37147925 |
agatggaaattacatattggaaattgtggcaatttatttctca-aacttttgataattaatttttttcaataaatacttactatttgt |
37147839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 370
Target Start/End: Original strand, 13530998 - 13531084
Alignment:
| Q |
284 |
agatagaaattatatattggaaattgtttcaatttatttctcagaaattttgaaattatt-ttttcgcaattaatacttactatttgt |
370 |
Q |
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||||||||||||| ||||| ||||| | |||||||||||||| ||||||||||| |||| |||| |||| |||||||| ||||||| |
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| T |
13530998 |
agatagaaattatgtattgaaaattatgccaatttatttctca-aaattttgaaagtattgtttttccaataaatacttaatatttgt |
13531084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 370
Target Start/End: Original strand, 13620537 - 13620623
Alignment:
| Q |
284 |
agatagaaattatatattggaaattgtttcaatttatttctcagaaattttgaaattatt-ttttcgcaattaatacttactatttgt |
370 |
Q |
| |
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||||||||||||| ||||| ||||| | |||||||||||||| ||||||||||| |||| |||| |||| |||||||| ||||||| |
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| T |
13620537 |
agatagaaattatgtattgaaaattatgccaatttatttctca-aaattttgaaagtattgtttttccaataaatacttaatatttgt |
13620623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 363
Target Start/End: Original strand, 17867487 - 17867564
Alignment:
| Q |
286 |
atagaaattatatattggaaattgtttcaatttatttctcagaaattttgaaattattttttcgcaattaatacttac |
363 |
Q |
| |
|
||||||||||| ||| ||||||||| | |||||||| || | ||| ||| | |||||||||| |||||||||||||| |
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| T |
17867487 |
atagaaattatgtatcggaaattgtgttaatttattacttaaaaaatttaatattattttttttcaattaatacttac |
17867564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 26506802 - 26506852
Alignment:
| Q |
284 |
agatagaaattatatattggaaattgtttcaatttatttctcagaaatttt |
334 |
Q |
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||||| ||||||| ||||| ||||||| |||||||||||||||||||||| |
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| T |
26506802 |
agataaaaattatgtattgaaaattgtgccaatttatttctcagaaatttt |
26506852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 422
Target Start/End: Original strand, 21915021 - 21915049
Alignment:
| Q |
394 |
tgtcagtgtaaaactagtttacactgaca |
422 |
Q |
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| T |
21915021 |
tgtcagtgtaaaactagtttacactgaca |
21915049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 326
Target Start/End: Complemental strand, 36462 - 36422
Alignment:
| Q |
286 |
atagaaattatatattggaaattgtttcaatttatttctca |
326 |
Q |
| |
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||||||||||| ||||||||||||| | ||||||||||||| |
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|
| T |
36462 |
atagaaattatgtattggaaattgtgttaatttatttctca |
36422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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