View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19874_low_9 (Length: 433)
Name: NF19874_low_9
Description: NF19874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19874_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 39 - 416
Target Start/End: Complemental strand, 18706563 - 18706186
Alignment:
| Q |
39 |
tcctgagaagggtaagctaagagccgggtttaattccgcttttttcaaggaacaagcaatagaatacgtgaaacaagctgtgcaagaagataatgctgga |
138 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18706563 |
tcctgagaagagtaaggtaagagccgggtttaattccgcttttttcaaggaacaagcaatagaatacgtgaaacaagctgtgcaagaagataatgctgga |
18706464 |
T |
|
| Q |
139 |
aactacgcaaaagcatttcctttatacatgaacactttagagtatttcaaaacacacctcaaatacgagaaaaaccctaaaatcagagaagctattactc |
238 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18706463 |
aactatgcaaaagcgtttcctttatacatgaacactttagagtatttcaaaacacacctcaaatacgagaaaaaccctaaaatcagagaagctattactc |
18706364 |
T |
|
| Q |
239 |
agaaatgcacagggtatcttcgtcgtgctgaggagatccgttttgtgcttggtgatgggttgccgagacccgcatctgatggggatgttgctgttgcttt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18706363 |
agaaatgcacagggtatcttcgtcgtgctgaggagatccgttttgtgcttggtgatgggttgccgagacccgcatctgatggggatgttgctgttgcttt |
18706264 |
T |
|
| Q |
339 |
gaggctggaaacgaagcaggagaatggtggtgagagaagtggagaggatcctgagcaggataagctaagagcagggtt |
416 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18706263 |
gaggcaggaaatgaagcaggagaatggtggtgagagaagtggagaggatcctgagcaggataagctaagagcggggtt |
18706186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 252 - 385
Target Start/End: Complemental strand, 18706710 - 18706577
Alignment:
| Q |
252 |
gtatcttcgtcgtgctgaggagatccgttttgtgcttggtgatgggttgccgagacccgcatctgatggggatgttgctgttgctttgaggctggaaacg |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| || ||| ||||||||| ||||||| ||||||||| |||||| |
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| T |
18706710 |
gtatcttcgtcgtgctgaggagatccgttttgtgcttgatgatggtatgccgggaccagcttctaatggggatgctgctgttactttgaggccagaaacg |
18706611 |
T |
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| Q |
352 |
aagcaggagaatggtggtgagagaagtggagagg |
385 |
Q |
| |
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|||| | |||||| ||| |||||| |||||||| |
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| T |
18706610 |
aagccgaagaatgatggggagagagatggagagg |
18706577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 39 - 416
Target Start/End: Complemental strand, 15743610 - 15743233
Alignment:
| Q |
39 |
tcctgagaagggtaagctaagagccgggtttaattccgcttttttcaaggaacaagcaatagaatacgtgaaacaagctgtgcaagaagataatgctgga |
138 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15743610 |
tcctgagaagagtaaggtaagagccgggtttaattccgcttttttcaaggaacaagcaatagaatacgtgaaacaagctgtgcaagaagataatgctgga |
15743511 |
T |
|
| Q |
139 |
aactacgcaaaagcatttcctttatacatgaacactttagagtatttcaaaacacacctcaaatacgagaaaaaccctaaaatcagagaagctattactc |
238 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15743510 |
aactatgcaaaagcgtttcctttatacatgaacactttagagtatttcaaaacacacctcaaatacgagaaaaaccctaaaatcagagaagctattactc |
15743411 |
T |
|
| Q |
239 |
agaaatgcacagggtatcttcgtcgtgctgaggagatccgttttgtgcttggtgatgggttgccgagacccgcatctgatggggatgttgctgttgcttt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15743410 |
agaaatgcacagggtatcttcgtcgtgctgaggagatccgttttgtgcttggtgatgggttgccgagacccgcatctgatggggatgttgctgttgcttt |
15743311 |
T |
|
| Q |
339 |
gaggctggaaacgaagcaggagaatggtggtgagagaagtggagaggatcctgagcaggataagctaagagcagggtt |
416 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15743310 |
gaggcaggaaatgaagcaggagaatggtggtgagagaagtggagaggatcctgagcaggataagctaagagcggggtt |
15743233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 81 - 385
Target Start/End: Complemental strand, 15743928 - 15743624
Alignment:
| Q |
81 |
tttcaaggaacaagcaatagaatacgtgaaacaagctgtgcaagaagataatgctggaaactacgcaaaagcatttcctttatacatgaacactttagag |
180 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |||||||| |
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| T |
15743928 |
tttcaaggagcaagcaatagaatacgtgaaacaagctgtgcaagaagataatgctggaaactacgcaagagcgtttccgttatacatgaacgctttagag |
15743829 |
T |
|
| Q |
181 |
tatttcaaaacacacctcaaatacgagaaaaaccctaaaatcagagaagctattactcagaaatgcacagggtatcttcgtcgtgctgaggagatccgtt |
280 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
15743828 |
tatttcaaaacacatctcaaatacgagaaaaaccctgaaatcaaagaagctattactcagaaattttcagagtatcttcgtcgtgctgaggagatccgtt |
15743729 |
T |
|
| Q |
281 |
ttgtgcttggtgatgggttgccgagacccgcatctgatggggatgttgctgttgctttgaggctggaaacgaagcaggagaatggtggtgagagaagtgg |
380 |
Q |
| |
|
||||||||| |||||| ||||| |||| || ||| ||||||||| ||||||| ||||||||| |||||||||| | |||||| ||| |||||| ||| |
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| T |
15743728 |
ttgtgcttgatgatggtatgccgggaccagcttctaatggggatgctgctgttactttgaggccagaaacgaagccgaagaatgatggggagagagatgg |
15743629 |
T |
|
| Q |
381 |
agagg |
385 |
Q |
| |
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||||| |
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| T |
15743628 |
agagg |
15743624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 81 - 276
Target Start/End: Complemental strand, 36237076 - 36236881
Alignment:
| Q |
81 |
tttcaaggaacaagcaatagaatacgtgaaacaagctgtgcaagaagataatgctggaaactacgcaaaagcatttcctttatacatgaacactttagag |
180 |
Q |
| |
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|||||||||||||||||| || |||||||||||||| || | | ||| ||||| |||||||| ||||||| |||||||||||||||||| |||||||| |
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| T |
36237076 |
tttcaaggaacaagcaatcgagtacgtgaaacaagccgtagatgcagacaatgccggaaactattcaaaagcgtttcctttatacatgaacgctttagag |
36236977 |
T |
|
| Q |
181 |
tatttcaaaacacacctcaaatacgagaaaaaccctaaaatcagagaagctattactcagaaatgcacagggtatcttcgtcgtgctgaggagatc |
276 |
Q |
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||||||||||| || | || ||||| ||||||||||||||||||||||| ||||| ||||||| ||| | |||| | |||||||||||||||||| |
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| T |
36236976 |
tatttcaaaacccatttaaagtacgaaaaaaaccctaaaatcagagaagcaattacgcagaaattcaccgagtatttacgtcgtgctgaggagatc |
36236881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 81 - 296
Target Start/End: Original strand, 19412644 - 19412859
Alignment:
| Q |
81 |
tttcaaggaacaagcaatagaatacgtgaaacaagctgtgcaagaagataatgctggaaactacgcaaaagcatttcctttatacatgaacactttagag |
180 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| || |||||| ||| |||||||||| |||||||| |||||||||||||||||| | |||||| |
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| T |
19412644 |
tttcaaggaacaagcaatagaattcgtgaaacaagcagtaacagaagacaattctggaaactatgcaaaagcctttcctttatacatgaacgcgttagag |
19412743 |
T |
|
| Q |
181 |
tatttcaaaacacacctcaaatacgagaaaaaccctaaaatcagagaagctattactcagaaatgcacagggtatcttcgtcgtgctgaggagatccgtt |
280 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||||||||| | ||||| ||||| ||||||| ||| | ||||||||||||||| |||||||||||| |
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|
| T |
19412744 |
tatttcaaaactcatctcaagtacgagaaaaaccctaaaattaaggaagcaattacgcagaaattcaccgagtatcttcgtcgtgcggaggagatccgtg |
19412843 |
T |
|
| Q |
281 |
ttgtgcttggtgatgg |
296 |
Q |
| |
|
|||||||| |||||| |
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|
| T |
19412844 |
ctgtgcttgatgatgg |
19412859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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