View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19875_high_1 (Length: 898)

Name: NF19875_high_1
Description: NF19875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19875_high_1
NF19875_high_1
[»] chr2 (5 HSPs)
chr2 (15-880)||(35183702-35184567)
chr2 (44-366)||(35105782-35106104)
chr2 (15-393)||(35177704-35178082)
chr2 (15-362)||(35169413-35169760)
chr2 (21-348)||(35054846-35055173)
[»] chr7 (5 HSPs)
chr7 (50-381)||(25484251-25484582)
chr7 (111-363)||(25636510-25636762)
chr7 (41-373)||(25436248-25436580)
chr7 (111-359)||(25442322-25442570)
chr7 (41-360)||(25478730-25479049)
[»] chr5 (2 HSPs)
chr5 (284-372)||(500356-500444)
chr5 (130-176)||(16466136-16466182)


Alignment Details
Target: chr2 (Bit Score: 818; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 818; E-Value: 0
Query Start/End: Original strand, 15 - 880
Target Start/End: Original strand, 35183702 - 35184567
Alignment:
15 caaaggcattctggtacaccccgctctgttttcgtacatgagatggatcaacatcataaaaaatagggaaaacagtctgtttcaattctatatgacattc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||| ||||    
35183702 caaaggcattctggtacaccccgctctgttttcgtacatgagatggatcggcatcataaaaaatagggaaaacagtctgtttcaattctgtatgatattc 35183801  T
115 agcaatagtggccatctcttccaaacaccatgttgactccgcataatttttagagaagacaacaatagaaatccgagaactttgaattgcttgtagaagt 214  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35183802 agcaatagtggccatctcttccaaacataatgttgactccgcataatttttagagaagacaacaatagaaatccgagaactttgaattgcttgtagaagt 35183901  T
215 tgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcgaaaatacccttagttgttagatgagcataaagatgatcaacaaaagtgt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
35183902 tgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcgaaaatacccttagttgttagatgagcatgaagatgatcaacaaaagtgc 35184001  T
315 tgcgggtgtcagcaccacggaaactgataaacacatcatatctatagctttggatgctattggaatcactggaagaacctatatctccctgacccaaatg 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35184002 tgcgggtgtcagcaccacggaaactgataaacacatcatatctatagctttggatgctattggaatcactggaagaacctatatctccctgacccaaatg 35184101  T
415 gatcaaatcggaagatgtcaaacgactctgtggtcgaaacagtggcaggagcatggacttctatgagagcaacatgtctggtgatataagaaatgaaaat 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35184102 gatcaaatcggaagatgtcaaacgactctgtggtcgaaacagtggcaggagcatggacttctatgagagcaacatgtctggtgatataagaaatgaaaat 35184201  T
515 gcatctcatcaattaaatattaatgacaataagagttaaccttcaatttaggtcctagtccctgaactataaaaatacaataaatagtccttacaacatt 614  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
35184202 gcatctcatcaattaaatattaatgacaataagagttaactttcaatttagttcctagtccctgaactataaaaatacaataaatagtccttacaacatt 35184301  T
615 ctcaattcatcatgtttgtcccttatttactttgaaaataagatagaaactgaaagtaatagttcagagactactttgatagattgagaatagtataggg 714  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35184302 ctcaattcatcatgtttgtcccttatttactttgaaaataggatagaaactgaaagtaatagttcagagactactttgatagattgagaatagtataggg 35184401  T
715 actttttattacatttatttagttcaaggaccaaagaataaagtggcggtacgtagtttaggaaccgaaatgaaggcctactctaaaaaactaatgttat 814  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35184402 actttttattacatttatttagttcaaggaccaaagaataaagtggcggtacgtagtttaggaaccgaaatgaaggcctactctaaaaaactaatgttat 35184501  T
815 atgtaaattactgaataaaccatcaatttgatcattaaactagcactttctctccaagttagtccc 880  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
35184502 atgtaaattactgaataaaccatcaatttgatccttaaactagcactttctctccaagttagtccc 35184567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 44 - 366
Target Start/End: Original strand, 35105782 - 35106104
Alignment:
44 tttcgtacatgagatggatcaacatcataaaaaatagggaaaacagtctgtttcaattctatatgacattcagcaatagtggccatctcttccaaacacc 143  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||  | || | |||||||||| ||| |||||||||||||||||||    
35105782 tttcgaacatgagatggatcaacatcataaaaaacagggaaaacagtttgtttcaatcttttacggcattcagcaacagtagccatctcttccaaacacc 35105881  T
144 atgttgactccgcataatttttagagaagacaacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttcaag 243  Q
    |||||||||| |||||  ||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||    
35105882 atgttgactcggcatatctttcagagaagacaacaatagaaacccgagaattttgaattgcttgaagaagttgcggcgaaagggattctcctttctcaag 35105981  T
244 tcttttgtcatccttgaaagcgaaaatacccttagttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgata 343  Q
     ||||  ||||||||||| || |||||||||||  || |||||||||||||||||||||| |||||||||||||| ||||| | ||| | ||||||||||    
35105982 cctttgatcatccttgaaggcaaaaataccctttctttttagatgagcataaagatgatcgacaaaagtgttgcgcgtgtctggacctctgaaactgata 35106081  T
344 aacacatcatatctatagctttg 366  Q
    ||||| || ||||||||||||||    
35106082 aacacgtcgtatctatagctttg 35106104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 15 - 393
Target Start/End: Original strand, 35177704 - 35178082
Alignment:
15 caaaggcattctggtacaccccgctctgttttcgtacatgagatggatcaacatcataaaaaatagggaaaacagtctgtttcaattctatatgacattc 114  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||  | ||||||||||| |||||||||||| |||   || |   || |||||||    
35177704 caaaggcattctggtacacaccgttctgttttcgtacatgagatggattgatatcataaaaaacagggaaaacagtttgtaagaaattgctacgacattc 35177803  T
115 agcaatagtggccatctcttccaaacaccatgttgactccgcataatttttagagaagacaacaatagaaatccgagaactttgaattgcttgtagaagt 214  Q
    | ||||||| ||||| ||||||||||||||||||||||| |||||  |||  ||||||||||| ||||| ||||| ||| ||  |||||||||| |||||    
35177804 aacaatagtagccatttcttccaaacaccatgttgactcagcatatctttctgagaagacaacgatagatatccgtgaatttgcaattgcttgtcgaagt 35177903  T
215 tgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcgaaaatacccttagttgttagatgagcataaagatgatcaacaaaagtgt 314  Q
    ||| |||||||| |||||||||| || || ||||| ||||||||||| || |||||||| ||  ||||||||||||||||||||||||||||||||||||    
35177904 tgcagcgaaaggcattctcctttctcgagccttttatcatccttgaacgcaaaaataccttttcttgttagatgagcataaagatgatcaacaaaagtgt 35178003  T
315 tgcgggtgtcagcaccacggaaactgataaacacatcatatctatagctttggatgctattggaatcactggaagaacc 393  Q
    |||||||||| | ||| | ||||||||||||||| || ||| ||||||| || |  | | |||||||| ||||||||||    
35178004 tgcgggtgtctggacctctgaaactgataaacacgtcgtatttatagctatgcactccactggaatcaatggaagaacc 35178082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 35169413 - 35169760
Alignment:
15 caaaggcattctggtacaccccgctctgttttcgtacatgagatggatcaacatcataaaaaatagggaaaacagtctgtttcaattctatatgacattc 114  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||||||||| ||||||||||| |||||||||  |  ||| ||| ||  ||   | |||    
35169413 caaaggcattctggtacacaccattctcttttcgtacatgagatggatcaatatcataaaaaacagggaaaactattcgttgcaaatcgttacatctttc 35169512  T
115 agcaatagtggccatctcttccaaacaccatgttgactccgcataatttttagagaagacaacaatagaaatccgagaactttgaattgcttgtagaagt 214  Q
    | |||| || ||||| ||||||||||||||||||||||| |||||  |||  ||||||||||||||||||||||| ||| ||  |||||||||| || ||    
35169513 aacaatggtagccatttcttccaaacaccatgttgactcagcatatctttctgagaagacaacaatagaaatccgtgaatttgtaattgcttgtcgatgt 35169612  T
215 tgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcgaaaatacccttagttgttagatgagcataaagatgatcaacaaaagtgt 314  Q
    ||||  |||| | |||||||||| || || ||||| ||||||||||| ||||||| ||||||  | ||||||||||||||||||||||||||||||||||    
35169613 tgcgttgaaaagcattctcctttctctagccttttatcatccttgaaggcgaaaacaccctttctagttagatgagcataaagatgatcaacaaaagtgt 35169712  T
315 tgcgggtgtcagcaccacggaaactgataaacacatcatatctatagc 362  Q
    | ||||||||||| || | |||||||||||||||||| ||| ||||||    
35169713 tacgggtgtcagcgcctctgaaactgataaacacatcgtatttatagc 35169760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 21 - 348
Target Start/End: Original strand, 35054846 - 35055173
Alignment:
21 cattctggtacaccccgctctgttttcgtacatgagatggatcaacatcataaaaaatagggaaaacagtctgtttcaattctatatgacattcagcaat 120  Q
    ||||||| || ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| || ||||| || |    |  ||| ||||||||    
35054846 cattctgatataccccactctgctttcgtacatcagatggatcaacatcataaaaaatagggaaaactgtttgtttgaaatactcacaacaatcagcaat 35054945  T
121 agtggccatctcttccaaacaccatgttgactccgcataatttttagagaagacaacaatagaaatccgagaactttgaattgcttgtagaagttgcggc 220  Q
     |  |||||||||||||||||||| ||||| || |||||  |||||||||||||||||||| |||| || ||| || |||||||||||||||| |||||     
35054946 tgcagccatctcttccaaacaccaagttgattcggcatatgttttagagaagacaacaataaaaattcgcgaatttcgaattgcttgtagaagctgcggt 35055045  T
221 gaaagggattctcctttttcaagtcttttgtcatccttgaaagcgaaaatacccttagttgttagatgagcataaagatgatcaacaaaagtgttgcggg 320  Q
    ||||   |||||||||| ||||| ||||||||||||||||| || |||||||| ||  |||||||||||||||||||||||||||||||| | ||||| |    
35055046 gaaataaattctcctttctcaagacttttgtcatccttgaaggcaaaaataccttttcttgttagatgagcataaagatgatcaacaaaactattgcgag 35055145  T
321 tgtcagcaccacggaaactgataaacac 348  Q
    |||||| ||| |  |||||||| |||||    
35055146 tgtcaggacctctaaaactgatgaacac 35055173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 5e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 50 - 381
Target Start/End: Complemental strand, 25484582 - 25484251
Alignment:
50 acatgagatggatcaacatcataaaaaatagggaaaacagtctgtttcaattctatatgacattcagcaatagtggccatctcttccaaacaccatgttg 149  Q
    |||||||||||||||||||||||||||| ||||||||||   |||||||| | |||   | ||||   |||||  ||||| || ||||||||||||||||    
25484582 acatgagatggatcaacatcataaaaaacagggaaaacaacttgtttcaaatttattctagattcgctaatagcagccatttcatccaaacaccatgttg 25484483  T
150 actccgcataatttttagagaagacaacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttcaagtctttt 249  Q
    |    ||||||| ||| ||||| ||||| |||||||| || ||   ||||||||||||||||||||| || |||| || ||||||||| |  ||    ||    
25484482 aagaagcataatctttggagaaaacaacgatagaaatgcgtgactgttgaattgcttgtagaagttggggtgaaatggcttctcctttctgtagctgctt 25484383  T
250 gtcatccttgaaagcgaaaatacccttagttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaacaca 349  Q
    |||||||||||| | ||||||||| ||  |  | |||||||| || ||||| |||||||| |  || |||||||||| ||| | ||||||||| ||||||    
25484382 gtcatccttgaaggtgaaaataccttttctattgagatgagcgtagagatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacaca 25484283  T
350 tcatatctatagctttggatgctattggaatc 381  Q
    || ||||||||||||||| ||||||| |||||    
25484282 tcgtatctatagctttggttgctattagaatc 25484251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 111 - 363
Target Start/End: Complemental strand, 25636762 - 25636510
Alignment:
111 attcagcaatagtggccatctcttccaaacaccatgttgactccgcataatttttagagaagacaacaatagaaatccgagaactttgaattgcttgtag 210  Q
    ||||| ||||||  ||||| || |||||||||||||||||    ||||||| ||| ||||||||||  ||||||| ||| |||  || |||||| || |     
25636762 attcatcaatagcagccatttcatccaaacaccatgttgatgaagcataatctttggagaagacaatgatagaaacccgcgaatctttaattgcctgcaa 25636663  T
211 aagttgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcgaaaatacccttagttgttagatgagcataaagatgatcaacaaaa 310  Q
    ||||||  | |||| |||||| ||||| | |||   ||||||||||||||| |   ||||||| ||  | || ||||||||||| ||||| ||||||||     
25636662 aagttggagtgaaatggattcgcctttctgaagcgatttgtcatccttgaaggtcgaaataccttttctagtgagatgagcatagagatggtcaacaaag 25636563  T
311 gtgttgcgggtgtcagcaccacggaaactgataaacacatcatatctatagct 363  Q
    |||||||||||||||| ||| | |||||||||||| ||||||||| |||||||    
25636562 gtgttgcgggtgtcaggacctctgaaactgataaatacatcatatttatagct 25636510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 41 - 373
Target Start/End: Original strand, 25436248 - 25436580
Alignment:
41 tgttttcgtacatgagatggatcaacatcataaaaaatagggaaaacagtctgtttcaattctatatgacattcagcaatagtggccatctcttccaaac 140  Q
    |||||||| |||||||||||||| ||||||||||||| |||||| |||   |||||||||| | |   | ||||| ||||||  ||||| || |||||||    
25436248 tgttttcgaacatgagatggatcgacatcataaaaaacagggaatacaacttgtttcaatttttttctagattcatcaatagcagccatttcatccaaac 25436347  T
141 accatgttgactccgcataatttttagagaagacaacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttc 240  Q
    ||||||||||    ||||||| | | ||||| ||||  ||| ||| ||| || | | ||||||||||||||||||| || |||| || |||||||||||     
25436348 accatgttgatgaagcataatctcttgagaaaacaatgatacaaacccgtgaccgtcgaattgcttgtagaagttggggtgaaatggcttctcctttttg 25436447  T
241 aagtcttttgtcatccttgaaagcgaaaatacccttagttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactg 340  Q
     ||    |||||||||||||| |  |||||||| ||  |   ||||||||  |  ||||||||||||||||  |||||||| |||| ||| |  ||||||    
25436448 gagctgcttgtcatccttgaaggtaaaaataccttttctaactagatgagagtggagatgatcaacaaaagaattgcgggtctcagaacctctaaaactg 25436547  T
341 ataaacacatcatatctatagctttggatgcta 373  Q
    || |||||||| ||| ||| | ||| |||||||    
25436548 atgaacacatcgtatttatggttttcgatgcta 25436580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 111 - 359
Target Start/End: Complemental strand, 25442570 - 25442322
Alignment:
111 attcagcaatagtggccatctcttccaaacaccatgttgactccgcataatttttagagaagacaacaatagaaatccgagaactttgaattgcttgtag 210  Q
    ||||| ||||||  ||||| || |||||||||||||||||    ||||||| ||| ||||||||||  ||||||| ||| |||  || |||||| || |     
25442570 attcatcaatagcagccatttcatccaaacaccatgttgatgaagcataatctttggagaagacaatgatagaaacccgcgaatctttaattgcctgcaa 25442471  T
211 aagttgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcgaaaatacccttagttgttagatgagcataaagatgatcaacaaaa 310  Q
    ||||||  | |||| |||||| ||||| | |||   |||||||||||||||  |||||||||| ||  | || |||||| | || ||||| ||||||||     
25442470 aagttggagtgaaatggattcgcctttctgaagcgatttgtcatccttgaagacgaaaataccttttctagtgagatgatcgtagagatggtcaacaaag 25442371  T
311 gtgttgcgggtgtcagcaccacggaaactgataaacacatcatatctat 359  Q
    |  ||||||||||||| ||| |  |||||||| |||||||| |||||||    
25442370 gaattgcgggtgtcaggacctctaaaactgatgaacacatcgtatctat 25442322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 360
Target Start/End: Original strand, 25478730 - 25479049
Alignment:
41 tgttttcgtacatgagatggatcaacatcataaaaaatagggaaaacagtctgtttcaattctatatgacattcagcaatagtggccatctcttccaaac 140  Q
    |||||||| |||||||||||||| |||| ||| |||| ||| |||||| | ||||| | || | || | || || ||||||   | ||| || |||||||    
25478730 tgttttcggacatgagatggatcgacataatagaaaacaggtaaaacaatttgttttagttttgtaaggcagtcggcaataacagtcatttcatccaaac 25478829  T
141 accatgttgactccgcataatttttagagaagacaacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttc 240  Q
    |||| |||||  | ||||||| ||  ||||||||||| |||||||  || ||   ||||||||| ||| |||||||  | |||| |||||| ||||| ||    
25478830 accaagttgagccagcataatcttctgagaagacaactatagaaagacgcgattgttgaattgcctgtcgaagttggagtgaaatggattcccctttctc 25478929  T
241 aagtcttttgtcatccttgaaagcgaaaatacccttagttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactg 340  Q
     ||    | ||||||| |||| | ||||||||| ||  | || ||||||||||| ||||| ||| |||| || || |||||||||  ||| | |||||||    
25478930 gagctgctggtcatccatgaacgtgaaaataccttttctagtgagatgagcatagagatggtcagcaaaggttttacgggtgtcaatacctctgaaactg 25479029  T
341 ataaacacatcatatctata 360  Q
    |||||||| || ||||||||    
25479030 ataaacacgtcgtatctata 25479049  T

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Target: chr5 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 284 - 372
Target Start/End: Original strand, 500356 - 500444
Alignment:
284 agatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaacacatcatatctatagctttggatgct 372  Q
    ||||||||||| ||||||||||||||||||||||| ||||| | ||| | |||||||||||||||||||||||||||||||||||||||    
500356 agatgagcatagagatgatcaacaaaagtgttgcgtgtgtcggaacctctgaaactgataaacacatcatatctatagctttggatgct 500444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 16466136 - 16466182
Alignment:
130 ctcttccaaacaccatgttgactccgcataatttttagagaagacaa 176  Q
    |||||||||||||||| ||||| ||||||| ||||||||||| ||||    
16466136 ctcttccaaacaccattttgacaccgcatagtttttagagaaaacaa 16466182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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