View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19875_high_13 (Length: 239)
Name: NF19875_high_13
Description: NF19875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19875_high_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 25495369 - 25495145
Alignment:
| Q |
15 |
attttcattagcctttagtacactagttgatgaacaagtaatagtggacacaaatggaaaccctattttccctggtgggagatactatctcatgccacct |
114 |
Q |
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| T |
25495369 |
attttcattagcctttagtacactagttgatgaacaagtagtagtggacacaaatggaaaccctattttccctggtgggagatactatctcatgccacct |
25495270 |
T |
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| Q |
115 |
atctttggagcagcaggtggtggagtaaagcttggtcatgatacagaaagctcaacatgtccagttgcagtatttcaagattattctgaggttgtgaatg |
214 |
Q |
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| T |
25495269 |
atctttggagcagcaggtggtggagtaaagcttggtcatgatacagaaagctcaacatgtccagttgcagtatttcaagattattctgaggttgtgaatg |
25495170 |
T |
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| Q |
215 |
gcctacaagtgaaatttatcatacc |
239 |
Q |
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| T |
25495169 |
gcctacaagtgaaatttatcatacc |
25495145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 215
Target Start/End: Complemental strand, 24222409 - 24222258
Alignment:
| Q |
61 |
gacacaaatggaaaccctattttccctggtgggagatactatctcatgccacctatctttggagcagcaggtggtggagtaaagcttggtcatgatacag |
160 |
Q |
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| T |
24222409 |
gacacaaatggaaaccccatttttcctggtggcacattctatattatgccatcaatctttggagcagctggtggtggattgaggcttgg---taagacaa |
24222313 |
T |
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| Q |
161 |
aaagctcaacatgtccagttgcagtatttcaagattattctgaggttgtgaatgg |
215 |
Q |
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| T |
24222312 |
aaaactcaaaatgtccacttactgtacttcaagattattctgaggttgtcaatgg |
24222258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 20460985 - 20460847
Alignment:
| Q |
65 |
caaatggaaaccctattttccctggtgggagatactatctcatgccacctatctttggagcagcaggtggtggagtaaagcttggtcatgatacagaaag |
164 |
Q |
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| T |
20460985 |
caaatggaaaccctattttcttttctagtagattctatgttaagccatctatatttggagctgctggtggtggagtaaagcttgg---tgaaacaggaaa |
20460889 |
T |
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| Q |
165 |
ctcaacatgtccagttgcagtatttcaagattattctgaggt |
206 |
Q |
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| T |
20460888 |
ctcatcatgtccacttactgtacttcaagattattctgaggt |
20460847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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