View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19875_high_14 (Length: 238)

Name: NF19875_high_14
Description: NF19875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19875_high_14
NF19875_high_14
[»] chr4 (2 HSPs)
chr4 (1-222)||(43708104-43708322)
chr4 (146-205)||(4569447-4569506)
[»] chr8 (1 HSPs)
chr8 (152-205)||(590181-590234)
[»] chr7 (2 HSPs)
chr7 (152-205)||(3320812-3320865)
chr7 (152-205)||(30246357-30246410)
[»] chr5 (2 HSPs)
chr5 (152-205)||(25451861-25451914)
chr5 (152-205)||(40222130-40222183)
[»] chr3 (4 HSPs)
chr3 (152-205)||(10094830-10094883)
chr3 (152-205)||(10201716-10201769)
chr3 (152-205)||(47878913-47878966)
chr3 (152-205)||(54192612-54192665)
[»] chr2 (1 HSPs)
chr2 (152-205)||(22713258-22713311)
[»] chr1 (1 HSPs)
chr1 (152-205)||(9525832-9525885)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43708322 - 43708104
Alignment:
Q  1 aacaaaatatattaagttcaagaaatgattaaatcttaaactttgatctaggtaatgaattggttaacacattcgactgattgtcttatgatgcaacnnn 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||       
T  43708322 aacaaaatatataaagttcaagaaatgattaaatcttaaactttgatccaggtaatgaattggttaacacattcgacttattgtcttctgatgcaacttt 43708223  T
Q  101 nnnnataacaattttcttagattctatcttttctgtagtgaaattcaaattaatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaa 200  Q
        ||||||||| |   |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43708222 ttttataacaattct---agattctatcttttctctagtgaaattcaaattaatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaa 43708126  T
Q  201 tgaattgcaaaatgtatcttca 222  Q
    ||||||||||||||||||||||    
T  43708125 tgaattgcaaaatgtatcttca 43708104  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 4569506 - 4569447
Alignment:
Q  146 caaattaatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 205  Q
    ||||| ||||| ||||||||||||  |||||||||| |  ||||||||||||||||||||    
T  4569506 caaatgaatgtcaatgtgttttgttctttcatgatatacctgatgatttgtcaaatgaat 4569447  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 590234 - 590181
Alignment:
Q  152 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 205  Q
    ||||| ||||||||||||| |||||||||| |  |||||||||| |||||||||    
T  590234 aatgtcaatgtgttttgtcctttcatgatatacctgatgatttgccaaatgaat 590181  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 3320812 - 3320865
Alignment:
Q  152 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 205  Q
    ||||| |||||| |||||| |||||||||| | ||||||||||| |||||||||    
T  3320812 aatgtcaatgtgctttgtcctttcatgatacacttgatgatttggcaaatgaat 3320865  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 30246410 - 30246357
Alignment:
Q  152 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 205  Q
    ||||||||||||||||||  |||||||||| |  |||||||||| |||||||||    
T  30246410 aatgttaatgtgttttgttctttcatgatatacctgatgatttgccaaatgaat 30246357  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 25451914 - 25451861
Alignment:
Q  152 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 205  Q
    ||||| ||||||||||||| |||||||||| |  |||||||||| |||||||||    
T  25451914 aatgtcaatgtgttttgtcctttcatgatatacctgatgatttgccaaatgaat 25451861  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 40222183 - 40222130
Alignment:
Q  152 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 205  Q
    ||||| ||||||||||||  |||||||||| |  ||||||||||||||||||||    
T  40222183 aatgtcaatgtgttttgttctttcatgatatacctgatgatttgtcaaatgaat 40222130  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 10094830 - 10094883
Alignment:
Q  152 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 205  Q
    ||||| |||||| |||||| |||||||||| |  ||||||||||||||||||||    
T  10094830 aatgtcaatgtgctttgtcctttcatgatacacctgatgatttgtcaaatgaat 10094883  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 10201716 - 10201769
Alignment:
Q  152 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 205  Q
    ||||| |||||| |||||| |||||||||| |  ||||||||||||||||||||    
T  10201716 aatgtcaatgtgctttgtcctttcatgatacacctgatgatttgtcaaatgaat 10201769  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 47878913 - 47878966
Alignment:
Q  152 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 205  Q
    ||||| ||||||||||||| |||||||||| |  |||||||||| |||||||||    
T  47878913 aatgtcaatgtgttttgtcctttcatgatatacctgatgatttgccaaatgaat 47878966  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 54192665 - 54192612
Alignment:
Q  152 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 205  Q
    ||||| ||||||||||||| |||||||||| |  |||||||||| |||||||||    
T  54192665 aatgtcaatgtgttttgtcctttcatgatatacctgatgatttgccaaatgaat 54192612  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 22713258 - 22713311
Alignment:
Q  152 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 205  Q
    ||||| ||||||||||||| |||||||||| |  |||||||||| |||||||||    
T  22713258 aatgtcaatgtgttttgtcctttcatgatatacctgatgatttgccaaatgaat 22713311  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 9525885 - 9525832
Alignment:
Q  152 aatgttaatgtgttttgtcatttcatgatagagttgatgatttgtcaaatgaat 205  Q
    ||||| |||||| |||||| |||||||||| | ||||||||||| |||||||||    
T  9525885 aatgtcaatgtgctttgtcctttcatgatacacttgatgatttgccaaatgaat 9525832  T

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