View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19875_high_16 (Length: 236)
Name: NF19875_high_16
Description: NF19875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19875_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 36421236 - 36421022
Alignment:
| Q |
1 |
cgagggtgtgtatgtggtggattgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattcttttttacttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36421236 |
cgagggtgtgtatgtggtggattgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattcttttttgcttg |
36421137 |
T |
|
| Q |
101 |
ctttcaatgctacgaaaaatgagggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttgggttccatttgg |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36421136 |
ctttcaatgccacgaaaaatgagggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttgggttccatttgg |
36421037 |
T |
|
| Q |
201 |
ggctatgaagtcagt |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
36421036 |
ggctatgaagtcagt |
36421022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36424760 - 36424539
Alignment:
| Q |
1 |
cgagggtgtgtatgtggtggattgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattcttttttacttg |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36424760 |
cgagggtgtgtgtgtggtggattgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattcttttttgcttg |
36424661 |
T |
|
| Q |
101 |
ctttcaatgctacgaaaaatgagggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttgggttccatttgg |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36424660 |
ctttcaatgccacgaaaaatgagggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttgggttccatttgg |
36424561 |
T |
|
| Q |
201 |
ggctatgaagtcagtaatgatg |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
36424560 |
ggctatgaagtcagtaaggatg |
36424539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 36427733 - 36427519
Alignment:
| Q |
1 |
cgagggtgtgtatgtggtggattgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattcttttttacttg |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||| ||| |||| |
|
|
| T |
36427733 |
cgagggtgtgtgtgtggtggattgatggttccaggtgggtatattagagcagcatatgcgacactttgtccgtcaagagctggaaattctgctttgcttg |
36427634 |
T |
|
| Q |
101 |
ctttcaatgctacgaaaaatgagggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttgggttccatttgg |
200 |
Q |
| |
|
||||||| ||| |||| |||||| |||||||||||| | ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36427633 |
ctttcaaggctttgaaagttgagggctgtatgtttggtggaagaagtgcgcggaaaccggtgaatgtgaagaagttgccatcaacttgggttccagttgg |
36427534 |
T |
|
| Q |
201 |
ggctatgaagtcagt |
215 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
36427533 |
ggctatgaaatcagt |
36427519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University