View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19875_high_2 (Length: 531)

Name: NF19875_high_2
Description: NF19875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19875_high_2
NF19875_high_2
[»] chr1 (24 HSPs)
chr1 (115-197)||(10765757-10765840)
chr1 (50-106)||(48872507-48872563)
chr1 (50-101)||(25061861-25061912)
chr1 (50-101)||(51339592-51339643)
chr1 (117-158)||(38832841-38832882)
chr1 (127-197)||(3346666-3346737)
chr1 (50-101)||(4604657-4604708)
chr1 (115-170)||(5493272-5493327)
chr1 (50-101)||(44730772-44730823)
chr1 (117-194)||(3346040-3346118)
chr1 (117-198)||(12214985-12215067)
chr1 (50-107)||(36930642-36930699)
chr1 (65-106)||(44959076-44959117)
chr1 (116-243)||(5494052-5494180)
chr1 (475-519)||(10401802-10401846)
chr1 (52-100)||(11460924-11460972)
chr1 (50-106)||(50527944-50528000)
chr1 (56-107)||(27352764-27352815)
chr1 (116-170)||(5489574-5489628)
chr1 (50-104)||(32821763-32821817)
chr1 (478-511)||(16385758-16385791)
chr1 (60-101)||(40595946-40595987)
chr1 (50-107)||(49621489-49621546)
chr1 (64-105)||(51571660-51571701)
[»] chr5 (14 HSPs)
chr5 (56-109)||(91349-91402)
chr5 (50-107)||(24792580-24792637)
chr5 (50-101)||(7144703-7144754)
chr5 (50-101)||(9636050-9636101)
chr5 (116-197)||(2807985-2808067)
chr5 (116-158)||(19986885-19986927)
chr5 (116-158)||(34799970-34800012)
chr5 (53-101)||(15639516-15639564)
chr5 (49-101)||(36581359-36581411)
chr5 (116-194)||(19516606-19516685)
chr5 (69-112)||(20040921-20040964)
chr5 (121-158)||(3959695-3959732)
chr5 (72-113)||(32731996-32732037)
chr5 (20-48)||(29803282-29803310)
[»] chr7 (8 HSPs)
chr7 (50-101)||(18157077-18157128)
chr7 (50-107)||(2469820-2469877)
chr7 (50-107)||(25940553-25940610)
chr7 (50-101)||(43107740-43107791)
chr7 (50-115)||(35072123-35072188)
chr7 (50-101)||(9031335-9031386)
chr7 (71-106)||(32428217-32428252)
chr7 (50-107)||(35098473-35098530)
[»] chr3 (15 HSPs)
chr3 (115-158)||(43020029-43020072)
chr3 (50-107)||(25959428-25959485)
chr3 (115-158)||(37521850-37521893)
chr3 (116-158)||(8237732-8237774)
chr3 (56-101)||(462293-462338)
chr3 (50-106)||(7867596-7867652)
chr3 (50-101)||(1901818-1901869)
chr3 (50-101)||(1911264-1911315)
chr3 (50-101)||(32795964-32796015)
chr3 (50-97)||(34607815-34607862)
chr3 (50-100)||(29800442-29800492)
chr3 (120-158)||(43021658-43021696)
chr3 (71-100)||(32687852-32687881)
chr3 (50-106)||(1295460-1295516)
chr3 (50-106)||(50294011-50294067)
[»] chr4 (12 HSPs)
chr4 (50-100)||(12638952-12639002)
chr4 (50-108)||(46567057-46567115)
chr4 (119-158)||(30925378-30925417)
chr4 (50-101)||(40847495-40847546)
chr4 (116-166)||(2215690-2215740)
chr4 (120-170)||(30926009-30926059)
chr4 (117-170)||(19655668-19655721)
chr4 (121-158)||(35603209-35603246)
chr4 (117-158)||(49605930-49605971)
chr4 (69-101)||(7795147-7795179)
chr4 (56-100)||(11997784-11997828)
chr4 (49-101)||(54801124-54801176)
[»] scaffold0166 (1 HSPs)
scaffold0166 (50-107)||(34963-35020)
[»] chr8 (10 HSPs)
chr8 (50-101)||(1796611-1796662)
chr8 (50-101)||(36740440-36740491)
chr8 (50-101)||(5782916-5782967)
chr8 (119-158)||(24409220-24409259)
chr8 (60-106)||(69513-69559)
chr8 (53-107)||(12045539-12045593)
chr8 (116-158)||(38214630-38214672)
chr8 (53-107)||(42443237-42443291)
chr8 (71-100)||(7678881-7678910)
chr8 (182-214)||(38214970-38215002)
[»] chr2 (10 HSPs)
chr2 (50-101)||(19668079-19668130)
chr2 (116-158)||(44021788-44021830)
chr2 (50-101)||(4842411-4842462)
chr2 (186-249)||(16262922-16262985)
chr2 (52-95)||(35792354-35792397)
chr2 (115-157)||(27530233-27530275)
chr2 (50-104)||(30856935-30856989)
chr2 (116-158)||(38564622-38564664)
chr2 (50-107)||(40951318-40951375)
chr2 (122-158)||(22898040-22898076)
[»] chr6 (7 HSPs)
chr6 (116-170)||(11314009-11314063)
chr6 (50-108)||(21443816-21443874)
chr6 (50-107)||(32730017-32730074)
chr6 (116-155)||(16260783-16260822)
chr6 (124-158)||(11589362-11589396)
chr6 (56-101)||(8173204-8173249)
chr6 (116-153)||(16242211-16242248)


Alignment Details
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 10765757 - 10765840
Alignment:
Q  115 tggggctgctaacttactcccacctaaaaatatgaaggagtaagccagcaagtcta-tcccactcgaattttactaaaaaacca 197  Q
    |||||||||||||||||||||||||||||| |||||||||||||  |||||| ||| ||||||| || ||||||||||||||||    
T  10765757 tggggctgctaacttactcccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgatttttactaaaaaacca 10765840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 48872507 - 48872563
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttctt 106  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||||||||| ||||    
T  48872507 aaaaggaaggttgtcaaataggttgtatcaaatggttgttcaaatatcattgctctt 48872563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 25061861 - 25061912
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  25061861 aaaaagaaggttgtcaaatagattgtatcaaatggttgttcaaatatcattg 25061912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 51339643 - 51339592
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||||||||||    
T  51339643 aaaatgaaggttgtcaaataggttgtaccaaatagttgttcaaatatcattg 51339592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 38832841 - 38832882
Alignment:
Q  117 gggctgctaacttactcccacctaaaaatatgaaggagtaag 158  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  38832841 gggctgctaacttactcccacctaaaaacatgaaggagtaag 38832882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 3346737 - 3346666
Alignment:
Q  127 cttactcccacctaaaaatatgaaggagtaagccagcaagtcta-tcccactcgaattttactaaaaaacca 197  Q
    |||||||||||||||||| |||||||||||||  |||||  ||| ||||||| | |||||||||||||||||    
T  3346737 cttactcccacctaaaaacatgaaggagtaagttagcaaccctactcccactagtattttactaaaaaacca 3346666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 4604657 - 4604708
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||||||||||||| ||| |||||||| ||||| ||||||||||||||||||    
T  4604657 aaaaagaaggttgtcaaacaggttgtaccaaatcgttgttcaaatatcattg 4604708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 5493272 - 5493327
Alignment:
Q  115 tggggctgctaacttactcccacctaaaaatatgaaggagtaagccagcaagtcta 170  Q
    |||||||||||||||||||| ||| |||||||||||| ||||||  ||||||||||    
T  5493272 tggggctgctaacttactccaacccaaaaatatgaagcagtaagttagcaagtcta 5493327  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 44730772 - 44730823
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||||||||||||| ||| |||||||| ||||| ||||||||||||||||||    
T  44730772 aaaaagaaggttgtcaaaaaggttgtaccaaatggttgttcaaatatcattg 44730823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 3346040 - 3346118
Alignment:
Q  117 gggctgctaacttactcccacctaaaaatatgaaggagtaagccagcaagtcta-tcccactcgaattttactaaaaaa 194  Q
    |||||||||||||| ||||||||||||| |||||||||||||  |||||  ||| ||||||| | ||||||| ||||||    
T  3346040 gggctgctaacttagtcccacctaaaaacatgaaggagtaagttagcaaccctactcccactagtattttacaaaaaaa 3346118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 12214985 - 12215067
Alignment:
Q  117 gggctgctaacttactcccacctaaaaatatgaaggagtaagccagcaagtcta-tcccactcgaattttactaaaaaaccaa 198  Q
    |||||||||||||||||||||  ||||| |||| ||||||||  ||||| |||| ||||||| | ||||||||||||| ||||    
T  12214985 gggctgctaacttactcccactcaaaaacatgatggagtaagttagcaactctactcccactagtattttactaaaaacccaa 12215067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 36930699 - 36930642
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttcttt 107  Q
    |||||||||||||| ||| ||||||||  |||| |||||||||||||||||| |||||    
T  36930699 aaaaagaaggttgtcaaaaaggttgtacaaaatggttgttcaaatatcattgctcttt 36930642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 44959076 - 44959117
Alignment:
Q  65 aaataggttgtatcaaatagttgttcaaatatcattgttctt 106  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  44959076 aaataagttgtatcaaatggttgttcaaatatcattgttctt 44959117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 243
Target Start/End: Complemental strand, 5494180 - 5494052
Alignment:
Q  116 ggggctgctaacttactcccacctaaaaatatgaaggagtaagccagcaagtcta-tcccactcgaattttactaaaaaaccaattctatccacataaaa 214  Q
    |||| |||||||||| ||||||| ||||| |||||||||||||  |||||| ||| ||||||| | |||| || ||||| |||||| |||| |  |||||    
T  5494180 ggggttgctaacttattcccacccaaaaacatgaaggagtaagttagcaagcctactcccacttgcatttgaccaaaaagccaattttatctatttaaaa 5494081  T
Q  215 tttgttttaagtaaagggtaaatttgtaa 243  Q
      |||||||||  |||| |||| ||||||    
T  5494080 catgttttaagccaaggataaacttgtaa 5494052  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 475 - 519
Target Start/End: Original strand, 10401802 - 10401846
Alignment:
Q  475 tacattttttatgtggataaacatatgtgtttattatgtgatctg 519  Q
    ||||| |||||||||||||||||||||| |||||||| |||||||    
T  10401802 tacatattttatgtggataaacatatgtctttattatatgatctg 10401846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 11460924 - 11460972
Alignment:
Q  52 aaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcatt 100  Q
    |||||||||||| ||| | |||||||||||| |||||||||||||||||    
T  11460924 aaagaaggttgtcaaaaaagttgtatcaaattgttgttcaaatatcatt 11460972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 50528000 - 50527944
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttctt 106  Q
    |||||||||||||| |||||| ||||| ||||| ||||||||||||| |||| ||||    
T  50528000 aaaaagaaggttgtcaaatagattgtagcaaatggttgttcaaatatgattgctctt 50527944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 27352764 - 27352815
Alignment:
Q  56 aaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttcttt 107  Q
    ||||||||  ||||||||||| ||||| |||||||||||||||||| |||||    
T  27352764 aaggttgtcgaataggttgtaccaaatggttgttcaaatatcattgctcttt 27352815  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 5489574 - 5489628
Alignment:
Q  116 ggggctgctaacttactcccacctaaaaatatgaaggagtaagccagcaagtcta 170  Q
    |||||||||||| |||||| | | |||||||||||||||||||  ||||||||||    
T  5489574 ggggctgctaacctactccaatccaaaaatatgaaggagtaagttagcaagtcta 5489628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 32821763 - 32821817
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttc 104  Q
    |||| ||| ||||| ||||| ||| |||||||| |||||||||||||||||||||    
T  32821763 aaaatgaatgttgtcaaataagttttatcaaatggttgttcaaatatcattgttc 32821817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 511
Target Start/End: Original strand, 16385758 - 16385791
Alignment:
Q  478 attttttatgtggataaacatatgtgtttattat 511  Q
    ||||||||||||||||||||||||| ||||||||    
T  16385758 attttttatgtggataaacatatgtctttattat 16385791  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 40595987 - 40595946
Alignment:
Q  60 ttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||| ||| |||||||||||||| ||||||||||||||||||    
T  40595987 ttgtcaaaaaggttgtatcaaatggttgttcaaatatcattg 40595946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 49621489 - 49621546
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttcttt 107  Q
    |||| |||| |||| |||||| ||||| ||||| |||||||||||||||||| |||||    
T  49621489 aaaatgaagattgtcaaatagattgtaccaaatggttgttcaaatatcattgctcttt 49621546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 51571660 - 51571701
Alignment:
Q  64 aaaataggttgtatcaaatagttgttcaaatatcattgttct 105  Q
    |||| |||||||| ||||| ||||||||||||||||||||||    
T  51571660 aaaaaaggttgtaccaaatggttgttcaaatatcattgttct 51571701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 91349 - 91402
Alignment:
Q  56 aaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttctttat 109  Q
    |||||||| |||||||||||||||||| |||||||||||||||||| |||||||    
T  91349 aaggttgtcaaataggttgtatcaaatggttgttcaaatatcattgctctttat 91402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 24792580 - 24792637
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttcttt 107  Q
    |||| ||||||||| |||||||||||| ||||| |||||||||||||||||| |||||    
T  24792580 aaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcttt 24792637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 7144703 - 7144754
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||||||||||||| ||| |||||||||||||| |||| |||||||||||||    
T  7144703 aaaaagaaggttgtcaaaaaggttgtatcaaatggttgctcaaatatcattg 7144754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 9636101 - 9636050
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||| ||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  9636101 aaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattg 9636050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 2807985 - 2808067
Alignment:
Q  116 ggggctgctaacttactcccacctaaaaatatgaaggagtaagccagcaagtcta-tcccactcgaattttactaaaaaacca 197  Q
    ||||| |||||||||||| |||||||||| | |||||||||||  |||||| ||| | ||||| | |||||||||||||||||    
T  2807985 ggggcagctaacttactctcacctaaaaacacgaaggagtaagttagcaagcctacttccacttgcattttactaaaaaacca 2808067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 19986927 - 19986885
Alignment:
Q  116 ggggctgctaacttactcccacctaaaaatatgaaggagtaag 158  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  19986927 ggggttgctaacttactcccacctaaaaacatgaaggagtaag 19986885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 34799970 - 34800012
Alignment:
Q  116 ggggctgctaacttactcccacctaaaaatatgaaggagtaag 158  Q
    ||||||||||||||||||||||||||||  |||||||||||||    
T  34799970 ggggctgctaacttactcccacctaaaatcatgaaggagtaag 34800012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 15639516 - 15639564
Alignment:
Q  53 aagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    ||||||||||| ||| |||||||| ||||| ||||||||||||||||||    
T  15639516 aagaaggttgtcaaaaaggttgtaccaaatggttgttcaaatatcattg 15639564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 36581411 - 36581359
Alignment:
Q  49 aaaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    ||||| ||||||||| ||||||||||||  |||| ||||||||||||||||||    
T  36581411 aaaaatgaaggttgtcaaataggttgtacaaaatggttgttcaaatatcattg 36581359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 19516685 - 19516606
Alignment:
Q  116 ggggctgctaacttactcccacctaaaaatatgaaggagtaagccagcaagtcta-tcccactcgaattttactaaaaaa 194  Q
    ||||||| ||||||||||||||  ||||| |||||||||||||  |||||||||| |||||||    |||||||||||||    
T  19516685 ggggctgttaacttactcccacacaaaaacatgaaggagtaagttagcaagtctactcccacttagtttttactaaaaaa 19516606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 20040921 - 20040964
Alignment:
Q  69 aggttgtatcaaatagttgttcaaatatcattgttctttattta 112  Q
    |||||||| ||||| |||||||||||||||||| ||||||||||    
T  20040921 aggttgtaccaaatggttgttcaaatatcattgctctttattta 20040964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 3959732 - 3959695
Alignment:
Q  121 tgctaacttactcccacctaaaaatatgaaggagtaag 158  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  3959732 tgctaacttactcccaccaaaaaacatgaaggagtaag 3959695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 32732037 - 32731996
Alignment:
Q  72 ttgtatcaaatagttgttcaaatatcattgttctttatttaa 113  Q
    ||||| ||||| |||||||||||||||||| |||||||||||    
T  32732037 ttgtaccaaatggttgttcaaatatcattgctctttatttaa 32731996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 29803282 - 29803310
Alignment:
Q  20 tattcacattatattcttactctctcttc 48  Q
    |||||||||||||||||||||||||||||    
T  29803282 tattcacattatattcttactctctcttc 29803310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 18157128 - 18157077
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||||||||||    
T  18157128 aaaaggaaggttgtcaaataggttgtaccaaatagttgttcaaatatcattg 18157077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 2469820 - 2469877
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttcttt 107  Q
    |||| ||||||||| |||||||||||| ||||| |||||||||||||||||| |||||    
T  2469820 aaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcttt 2469877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 25940610 - 25940553
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttcttt 107  Q
    |||| ||||||||| |||||| ||||| |||||||||||||||||||||||| |||||    
T  25940610 aaaatgaaggttgtcaaatagattgtaccaaatagttgttcaaatatcattgctcttt 25940553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 43107740 - 43107791
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||| ||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  43107740 aaaaggaaggttgttaaataggttgtaccaaatggttgttcaaatatcattg 43107791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 35072188 - 35072123
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttctttatttaatt 115  Q
    |||| |||| |||| ||| |||||||| |||||||||||||||||||||||| ||||  |||||||    
T  35072188 aaaatgaagattgtcaaaaaggttgtaccaaatagttgttcaaatatcattgctcttcttttaatt 35072123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 9031335 - 9031386
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||| ||||||||| |||||| ||||| ||||| ||||||||||||||||||    
T  9031335 aaaatgaaggttgtcaaatagattgtaccaaatggttgttcaaatatcattg 9031386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 32428217 - 32428252
Alignment:
Q  71 gttgtatcaaatagttgttcaaatatcattgttctt 106  Q
    ||||||||||||||||||||||||||||||| ||||    
T  32428217 gttgtatcaaatagttgttcaaatatcattgctctt 32428252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 35098530 - 35098473
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttcttt 107  Q
    |||| |||| |||| ||| |||||||| ||||||||||||||| |||||||| |||||    
T  35098530 aaaatgaagattgtcaaaaaggttgtaccaaatagttgttcaattatcattgctcttt 35098473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 43020029 - 43020072
Alignment:
Q  115 tggggctgctaacttactcccacctaaaaatatgaaggagtaag 158  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  43020029 tggggctgctaacttactcccacctaaaaacatgaaggagtaag 43020072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 25959485 - 25959428
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttcttt 107  Q
    |||| ||| ||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  25959485 aaaatgaaagttgtcaaataggttgtatcaaatggttgttcaaatatcattgctcttt 25959428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 37521850 - 37521893
Alignment:
Q  115 tggggctgctaacttactcccacctaaaaatatgaaggagtaag 158  Q
    |||||||||||||||||||||||| ||||| |||||||||||||    
T  37521850 tggggctgctaacttactcccacccaaaaacatgaaggagtaag 37521893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 8237732 - 8237774
Alignment:
Q  116 ggggctgctaacttactcccacctaaaaatatgaaggagtaag 158  Q
    ||||||| |||||||||||||||||||||||||||||| ||||    
T  8237732 ggggctgttaacttactcccacctaaaaatatgaaggaataag 8237774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 462338 - 462293
Alignment:
Q  56 aaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||||||| |||||||||||| ||||| ||||||||||||||||||    
T  462338 aaggttgtcaaataggttgtaccaaatggttgttcaaatatcattg 462293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 7867652 - 7867596
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttctt 106  Q
    |||| ||||||||| |||||| ||||| ||||| |||||||||||||||||| ||||    
T  7867652 aaaatgaaggttgtcaaatagattgtaccaaatggttgttcaaatatcattgctctt 7867596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 1901869 - 1901818
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||| ||||||||| |||||||||||| ||||| ||||||||||||| ||||    
T  1901869 aaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatattattg 1901818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 1911315 - 1911264
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||| ||||||||| |||||||||||| ||||| ||||||||||||| ||||    
T  1911315 aaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatattattg 1911264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 32795964 - 32796015
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||| ||| ||||| |||||||||||| ||||| ||||||||||||||||||    
T  32795964 aaaatgaaagttgtcaaataggttgtaccaaatggttgttcaaatatcattg 32796015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 34607862 - 34607815
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatc 97  Q
    |||| ||||||||| |||||| ||||| ||||||||||||||||||||    
T  34607862 aaaatgaaggttgtcaaatagattgtaccaaatagttgttcaaatatc 34607815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 29800492 - 29800442
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcatt 100  Q
    ||||||||| || | |||||||||||| |||||| ||||||||||||||||    
T  29800492 aaaaagaagattttcaaataggttgtaccaaataattgttcaaatatcatt 29800442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 43021696 - 43021658
Alignment:
Q  120 ctgctaacttactcccacctaaaaatatgaaggagtaag 158  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  43021696 ctgctaacttactcccacttaaaaacatgaaggagtaag 43021658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 100
Target Start/End: Complemental strand, 32687881 - 32687852
Alignment:
Q  71 gttgtatcaaatagttgttcaaatatcatt 100  Q
    ||||||||||||||||||||||||||||||    
T  32687881 gttgtatcaaatagttgttcaaatatcatt 32687852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 1295460 - 1295516
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttctt 106  Q
    |||||||||||||| |||   |||||| ||||| |||||||||||||||||| ||||    
T  1295460 aaaaagaaggttgtcaaaattgttgtagcaaatggttgttcaaatatcattgctctt 1295516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 50294067 - 50294011
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttctt 106  Q
    |||||||| ||||| ||||| |||||| ||||| |||||| ||||||||||| ||||    
T  50294067 aaaaagaaagttgtcaaataagttgtaccaaatggttgttaaaatatcattgctctt 50294011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 12638952 - 12639002
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcatt 100  Q
    |||| ||||||||| |||||||||||| |||||||||||||||||||||||    
T  12638952 aaaatgaaggttgtcaaataggttgtaacaaatagttgttcaaatatcatt 12639002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 46567057 - 46567115
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttcttta 108  Q
    |||| ||||||||| |||||||||||| ||||| |||||||||||||||||| ||||||    
T  46567057 aaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcttta 46567115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 119 - 158
Target Start/End: Original strand, 30925378 - 30925417
Alignment:
Q  119 gctgctaacttactcccacctaaaaatatgaaggagtaag 158  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  30925378 gctgctaacttactcccacctaaaaatattaaggagtaag 30925417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 40847495 - 40847546
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||||||||||||| ||| ||||||| |||||| ||||||||||||||||||    
T  40847495 aaaaagaaggttgtcaaaaaggttgtgtcaaatggttgttcaaatatcattg 40847546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 2215740 - 2215690
Alignment:
Q  116 ggggctgctaacttactcccacctaaaaatatgaaggagtaagccagcaag 166  Q
    |||| ||||||||||||| |||||||||||| |||||||||||| ||||||    
T  2215740 ggggttgctaacttactctcacctaaaaatacgaaggagtaagctagcaag 2215690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 30926059 - 30926009
Alignment:
Q  120 ctgctaacttactcccacctaaaaatatgaaggagtaagccagcaagtcta 170  Q
    ||||||||||||||||| ||||||| |||||||||||||  ||||||||||    
T  30926059 ctgctaacttactcccatctaaaaacatgaaggagtaagttagcaagtcta 30926009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 19655721 - 19655668
Alignment:
Q  117 gggctgctaacttactcccacctaaaaatatgaaggagtaagccagcaagtcta 170  Q
    |||||||||||||||||||||||||||  |||||| ||||||  ||||||||||    
T  19655721 gggctgctaacttactcccacctaaaaggatgaagtagtaagttagcaagtcta 19655668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 35603246 - 35603209
Alignment:
Q  121 tgctaacttactcccacctaaaaatatgaaggagtaag 158  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  35603246 tgctaacttactcccacccaaaaacatgaaggagtaag 35603209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 49605971 - 49605930
Alignment:
Q  117 gggctgctaacttactcccacctaaaaatatgaaggagtaag 158  Q
    |||||||||||||||||||||| ||||| ||| |||||||||    
T  49605971 gggctgctaacttactcccacccaaaaacatggaggagtaag 49605930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 7795147 - 7795179
Alignment:
Q  69 aggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||||||||||||| ||||||||||||||||||    
T  7795147 aggttgtatcaaatggttgttcaaatatcattg 7795179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 11997784 - 11997828
Alignment:
Q  56 aaggttgtaaaataggttgtatcaaatagttgttcaaatatcatt 100  Q
    |||| ||| |||||||||||| ||||| |||||||||||||||||    
T  11997784 aaggatgtcaaataggttgtaccaaatggttgttcaaatatcatt 11997828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 54801124 - 54801176
Alignment:
Q  49 aaaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    ||||| ||||||||| |||||  ||||| |||||| |||||||||||||||||    
T  54801124 aaaaatgaaggttgtcaaataaattgtaccaaataattgttcaaatatcattg 54801176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 34963 - 35020
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttcttt 107  Q
    |||| ||||||||| |||||||||||| ||||| |||||||||||||||||| |||||    
T  34963 aaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcttt 35020  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 1796611 - 1796662
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||| ||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  1796611 aaaaggaaggttgtcaaataggttgtaacaaatggttgttcaaatatcattg 1796662  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 36740440 - 36740491
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||| ||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  36740440 aaaatgaaggttgtcaaatagattgtatcaaatggttgttcaaatatcattg 36740491  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 5782916 - 5782967
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||| ||| ||||| |||||||||||| ||||| ||||||||||||||||||    
T  5782916 aaaatgaaagttgtcaaataggttgtaccaaatggttgttcaaatatcattg 5782967  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 158
Target Start/End: Original strand, 24409220 - 24409259
Alignment:
Q  119 gctgctaacttactcccacctaaaaatatgaaggagtaag 158  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  24409220 gctgctaacttactcccacccaaaaacatgaaggagtaag 24409259  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 69559 - 69513
Alignment:
Q  60 ttgtaaaataggttgtatcaaatagttgttcaaatatcattgttctt 106  Q
    |||| |||||||||||||||||| |||||||||||| ||||| ||||    
T  69559 ttgtcaaataggttgtatcaaatggttgttcaaatagcattgctctt 69513  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 12045593 - 12045539
Alignment:
Q  53 aagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttcttt 107  Q
    ||||||||||| ||| ||||| || ||||| |||||||||||||||||| |||||    
T  12045593 aagaaggttgtcaaaaaggttataccaaatggttgttcaaatatcattgctcttt 12045539  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 38214630 - 38214672
Alignment:
Q  116 ggggctgctaacttactcccacctaaaaatatgaaggagtaag 158  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||    
T  38214630 ggggctgctaacttacttccacccaaaaacatgaaggagtaag 38214672  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 42443237 - 42443291
Alignment:
Q  53 aagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttcttt 107  Q
    ||||||||||| ||| |  ||||| |||||||||||||||||||||||| |||||    
T  42443237 aagaaggttgtcaaaaaatttgtaccaaatagttgttcaaatatcattgctcttt 42443291  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 100
Target Start/End: Original strand, 7678881 - 7678910
Alignment:
Q  71 gttgtatcaaatagttgttcaaatatcatt 100  Q
    ||||||||||||||||||||||||||||||    
T  7678881 gttgtatcaaatagttgttcaaatatcatt 7678910  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 38214970 - 38215002
Alignment:
Q  182 ttttactaaaaaaccaattctatccacataaaa 214  Q
    ||||||||||||||||||||||||||| |||||    
T  38214970 ttttactaaaaaaccaattctatccacttaaaa 38215002  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 19668130 - 19668079
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||| ||||||| | |||||||||||||||||| ||||||||||||||||||    
T  19668130 aaaaggaaggttatcaaataggttgtatcaaatggttgttcaaatatcattg 19668079  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 44021830 - 44021788
Alignment:
Q  116 ggggctgctaacttactcccacctaaaaatatgaaggagtaag 158  Q
    |||||||| ||||||| ||||||||||||||||||||||||||    
T  44021830 ggggctgccaacttacacccacctaaaaatatgaaggagtaag 44021788  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 4842462 - 4842411
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||| ||||||||| |||||||||||||||||| || ||||| |||||||||    
T  4842462 aaaatgaaggttgtcaaataggttgtatcaaatggtagttcatatatcattg 4842411  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 16262922 - 16262985
Alignment:
Q  186 actaaaaaaccaattctatccacataaaatttgttttaagtaaagggtaaatttgtaattttca 249  Q
    |||||| ||| |||||||||||| |||||||||||| ||| || || |||||||||||| ||||    
T  16262922 actaaagaactaattctatccacttaaaatttgtttcaagcaagggataaatttgtaatattca 16262985  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 35792397 - 35792354
Alignment:
Q  52 aaagaaggttgtaaaataggttgtatcaaatagttgttcaaata 95  Q
    |||||||||||| ||||||||||||| |||| ||||||||||||    
T  35792397 aaagaaggttgttaaataggttgtattaaatggttgttcaaata 35792354  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 27530275 - 27530233
Alignment:
Q  115 tggggctgctaacttactcccacctaaaaatatgaaggagtaa 157  Q
    ||||| |||||||||||||||||| ||||| ||||||||||||    
T  27530275 tggggttgctaacttactcccacccaaaaacatgaaggagtaa 27530233  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 30856935 - 30856989
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttc 104  Q
    |||||||||||||| |||||  ||||| ||||| |||||||| ||||||||||||    
T  30856935 aaaaagaaggttgtcaaataaattgtaccaaatggttgttcatatatcattgttc 30856989  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 38564664 - 38564622
Alignment:
Q  116 ggggctgctaacttactcccacctaaaaatatgaaggagtaag 158  Q
    |||| |||||||||||| ||||||||||| |||||||||||||    
T  38564664 ggggatgctaacttacttccacctaaaaacatgaaggagtaag 38564622  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 40951318 - 40951375
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttcttt 107  Q
    |||| ||||||||| |||||||||||| | ||| |||||||| ||||||||| |||||    
T  40951318 aaaaggaaggttgtcaaataggttgtacctaatggttgttcatatatcattgctcttt 40951375  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 22898040 - 22898076
Alignment:
Q  122 gctaacttactcccacctaaaaatatgaaggagtaag 158  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  22898040 gctaatttactcccacctaaaaacatgaaggagtaag 22898076  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 11314063 - 11314009
Alignment:
Q  116 ggggctgctaacttactcccacctaaaaatatgaaggagtaagccagcaagtcta 170  Q
    |||| ||||||||||||| |||||||||||||||| |||||||  ||||||||||    
T  11314063 ggggttgctaacttactctcacctaaaaatatgaaagagtaagttagcaagtcta 11314009  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 21443816 - 21443874
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttcttta 108  Q
    |||| |||||||||  ||||| ||||| |||||||||||||||||||||||| ||||||    
T  21443816 aaaatgaaggttgtccaatagattgtaccaaatagttgttcaaatatcattgctcttta 21443874  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 32730017 - 32730074
Alignment:
Q  50 aaaaagaaggttgtaaaataggttgtatcaaatagttgttcaaatatcattgttcttt 107  Q
    |||||||| ||||| |||||||||||| ||||| |||||||| ||||||||| |||||    
T  32730017 aaaaagaatgttgtcaaataggttgtaccaaatggttgttcatatatcattgctcttt 32730074  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 16260783 - 16260822
Alignment:
Q  116 ggggctgctaacttactcccacctaaaaatatgaaggagt 155  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  16260783 ggggctgctaacttactcccacccaaaaacatgaaggagt 16260822  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 11589396 - 11589362
Alignment:
Q  124 taacttactcccacctaaaaatatgaaggagtaag 158  Q
    ||||||||||||||||||||| |||||||||||||    
T  11589396 taacttactcccacctaaaaacatgaaggagtaag 11589362  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 8173249 - 8173204
Alignment:
Q  56 aaggttgtaaaataggttgtatcaaatagttgttcaaatatcattg 101  Q
    |||||||| ||||||||| || ||||| ||||||||||||||||||    
T  8173249 aaggttgtcaaataggttataccaaatggttgttcaaatatcattg 8173204  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 16242248 - 16242211
Alignment:
Q  116 ggggctgctaacttactcccacctaaaaatatgaagga 153  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  16242248 ggggctgctaacttactcccaccaaaaaatataaagga 16242211  T

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