View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19875_high_3 (Length: 485)
Name: NF19875_high_3
Description: NF19875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19875_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 12 - 466
Target Start/End: Complemental strand, 12013800 - 12013345
Alignment:
| Q |
12 |
cacagacacaacactgagacaccaaatacacctttaatctgaagtgtcagttattgctacttagaaaaagctacatgctagaatctcatcagaactaagg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12013800 |
cacagacacaacactgagacaccaaatacacctttaa-----agtgtcagttattgctacttagaaaaagctacatgctagaatctcatgagaactaagg |
12013706 |
T |
|
| Q |
112 |
acatgtttgatttgatgatacaaaatggaatcagttaagaggaaaacctctttatcaacagggtgacgaaaatcatcagcatcaaggtcacgaaagacta |
211 |
Q |
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| T |
12013705 |
acatgtttggattgatgatacaaaatggaatcagttaagaggaaaacctctttatcaacagggtgacgaaaatcatcagcatcaaggtcacgaaagacta |
12013606 |
T |
|
| Q |
212 |
aa------gcagcnnnnnnnnnnnnnnnnncagcagctctagaaacagttaatccagctggtttgtgattgttgtgaacccgaatgaaccggatctttga |
305 |
Q |
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| T |
12013605 |
aagcagcagcagaagaagaagaagatgaagcagcagctctagaaacagttaatccagctggtttgtgattgttgtgaacccgaatgaaccggatctttga |
12013506 |
T |
|
| Q |
306 |
actggcaccgaaccgggctctatccgaaggcgaagcaacgaaagcgagtggctgagaaaagaaagaaacggaagccatggagatggaattgtaagaagag |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12013505 |
actggcaccgaaccgggctctatccgaaggcgaagcaacgaaagcgagtggctgagaaaagaaagaaacggaagccatggagatggaattgtaagatgag |
12013406 |
T |
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| Q |
406 |
agatagaaatggaatgaggattgtgtagcgtggtgatattattattattatttggggcttc |
466 |
Q |
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| T |
12013405 |
agatagaaatggaatgcggattgtgtagcgtgatgatattattattattatttggggcttc |
12013345 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 4216054 - 4216022
Alignment:
| Q |
30 |
acaccaaatacacctttaatctgaagtgtcagt |
62 |
Q |
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| T |
4216054 |
acaccaaatacacctttaatctgaagtgtcagt |
4216022 |
T |
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