View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19875_high_7 (Length: 373)
Name: NF19875_high_7
Description: NF19875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19875_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 5 - 356
Target Start/End: Complemental strand, 25105850 - 25105494
Alignment:
| Q |
5 |
gagcagcacagattgaacttttgatcatctcactaaccaactattccaattgcttaagccatcaggtcaactcatatgaatggttttatattatatacat |
104 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25105850 |
gagcagcaaagattgaacttttgatcatctcacgaaccaactattccaattgcttaagccatcaggtcaacttatatgaatggttttatattatatacat |
25105751 |
T |
|
| Q |
105 |
ctcaccaacagttggttcatgaaattaacttttccagcatttgaagacagagcgagctcaaatgtaatttatgaatttttaagatgcattcaggaactat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25105750 |
ctcaccaacagttggttcatgaaattaacttttccagcatttgaagacagagcgagctcaaatgtaatttatgaatttttaagatgcattcaggaactat |
25105651 |
T |
|
| Q |
205 |
tagataattaaataccctttagccatatcaattagcaagagcttcaactcactgaaatcgtgatatcatatatatcagtattgaagtccggatgtctttt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
25105650 |
tagataattaaataccctttagccatatcaattagcaagagcttcaactcactgaaatcgtgatatcttatatatcagtattgaagtccgaatgtctttt |
25105551 |
T |
|
| Q |
305 |
tatgcaagctcagtcaaccaagttctta-----tttctttgataatctatcatacat |
356 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25105550 |
tatgcaagctcagttacccaagttcttatctattttctttgataatctatcatacat |
25105494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University