View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19875_high_8 (Length: 368)
Name: NF19875_high_8
Description: NF19875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19875_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 45112713 - 45112360
Alignment:
| Q |
1 |
aaggggataaaaattgagtctaaataatttgttgagttt--taccttctttgagcgaggaattatagctgaaagctctgtgaatttatgtgctagttcaa |
98 |
Q |
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| T |
45112713 |
aaggggataaaaattgagtctaaataatttgttgagtttattaccttctttgagcgaggaattatagctgaaagctctgtgaatttatgtgctagttcaa |
45112614 |
T |
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| Q |
99 |
gtctccttctcctctctgccagtgtgtgaaatagagtcttagatttgcttctaataatcttctcttctttggctaatcctgtgccatttgcttttgattc |
198 |
Q |
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| T |
45112613 |
gtctccttctcctctctgccagtgtgtgaaatagagtcttagatttgcttctaataatcttctcttctttggctaatcctgtgccatttgcttttgattc |
45112514 |
T |
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| Q |
199 |
aaagtttagatttgaggaagtcccctttttagggtaacaaggtggtttggacttccctagtattgtggccatggaattattagaagagagaatgctagtt |
298 |
Q |
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| T |
45112513 |
aaagtttagatttgaggaagtcctctttttagggtaacaaggtggtttggacttccctagtattgtggccatggaattattagaagagagaatgctagtt |
45112414 |
T |
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| Q |
299 |
ataggaagcagctccggcgggcttgc---aaactccgtggcagcgggggctccg |
349 |
Q |
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| T |
45112413 |
ataggaagcagctccggcgggcttgcattaatctccgtggcagcggcggctccg |
45112360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 45123090 - 45123014
Alignment:
| Q |
39 |
ttaccttctttgagcgaggaattatagctgaaagctctgtgaatttatgtgctagttcaagtctccttctcctctct |
115 |
Q |
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||||||| |||||||||||||| |||| ||||||| | |||| || ||||| ||||||||||| ||| |||||||| |
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| T |
45123090 |
ttaccttatttgagcgaggaatgatagtggaaagctgtatgaacttgtgtgcaagttcaagtcttcttttcctctct |
45123014 |
T |
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