View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19875_low_15 (Length: 238)
Name: NF19875_low_15
Description: NF19875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19875_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 20326146 - 20325930
Alignment:
| Q |
14 |
ctgattcttcatcaccatgcctcctcgtaatcaaggtcctgatcaagaatctcccttttacgttcatccaagtgaaggtccttcatcgttaatcgtttct |
113 |
Q |
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| T |
20326146 |
ctgattcttcttcaccatgcctcctcgtaatcaaggtcctgatcaagaatctcctttttacgttcatccaagtgaaggtccttcatcgttaatcgtttct |
20326047 |
T |
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| Q |
114 |
cctaaacttgatggttccaattatctagcttggaatcattccatgaagcgttctctaggcacgaagaacaagcttggttttatcaatggctcaattgaac |
213 |
Q |
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| T |
20326046 |
cctaaacttgatggttccaattatctagcttggaatcgttccatgaagcgttctctaggcacaaagaacaagcttggttttatcaatggctcaattgaac |
20325947 |
T |
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| Q |
214 |
aacctgatcttgatgat |
230 |
Q |
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| T |
20325946 |
aacctgatcttgatgat |
20325930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 5921843 - 5921628
Alignment:
| Q |
15 |
tgattcttcatcaccatgcctcctcgtaatcaaggtcctgatcaagaatctcccttttacgttcatccaagtgaaggtccttcatcgttaatcgtttctc |
114 |
Q |
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| T |
5921843 |
tgattcttcttcaccatggctcctcgtaatcaaggtcctgatcaagaatctccatttcacgtgaatccaagtgaaggtccttcatctttaattgtttctc |
5921744 |
T |
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| Q |
115 |
ctaaacttgatggttccaattatctagcttggaatcattccatgaagcgttctctaggcacgaagaacaagcttggttttatcaatggctcaattgaaca |
214 |
Q |
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| T |
5921743 |
ctaagcttgatggttccagttatctagcttggaatcgttccatgaagcgttctctaggcacgaagaacaagcttggattcatcaatggctccattgaaca |
5921644 |
T |
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| Q |
215 |
acctgatcttgatgat |
230 |
Q |
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| T |
5921643 |
acccaatcttgatgat |
5921628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 26967834 - 26967925
Alignment:
| Q |
75 |
gttcatccaagtgaaggtccttcatcgttaatcgtttctcctaaacttgatggttccaattatctagcttggaatcattccatgaagcgttc |
166 |
Q |
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| T |
26967834 |
gttcatccgagtgaaggtccttcttccctcattgtttctcccaaacttgatggttccaactatgtggtgtggaatcattccatgaagcgttc |
26967925 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 34503926 - 34503842
Alignment:
| Q |
118 |
aacttgatggttccaattatctagcttggaatcattccatgaagcgttctctaggcacgaagaacaagcttggttttatcaatgg |
202 |
Q |
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| T |
34503926 |
aacttgatggatccaattatgatgcgtggaatcattccatgaagcgtgctttaagaacgaagaacaaaattggattcatcaatgg |
34503842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 27614813 - 27614747
Alignment:
| Q |
118 |
aacttgatggttccaattatctagcttggaatcattccatgaagcgttctctaggcacgaagaacaa |
184 |
Q |
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| T |
27614813 |
aacttgatggatccaattatgatgcatggaatcattccatgaagcgtgctttaagaacgaagaacaa |
27614747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 35085535 - 35085571
Alignment:
| Q |
166 |
ctctaggcacgaagaacaagcttggttttatcaatgg |
202 |
Q |
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| T |
35085535 |
ctctaggaacgaagaacaagcttggtttcatcaatgg |
35085571 |
T |
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