View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19875_low_4 (Length: 482)
Name: NF19875_low_4
Description: NF19875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19875_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 15 - 475
Target Start/End: Complemental strand, 48730462 - 48730002
Alignment:
| Q |
15 |
ttttccttgtaccaaagtaaccttgatatcattcttttaatataatttgttggcatcatgaatgacccattgaatgcagcagcacagatgggagatatag |
114 |
Q |
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| T |
48730462 |
ttttccttgtaccaaagtaaccttgatatcgttcttttaatataatttgttggcatcatgaatgacccattgaatgcagcagcacaaatgggagatatag |
48730363 |
T |
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| Q |
115 |
acttgctatacaaactgattcaaatggatccttacatcttagaacgctataatttaataccatttgttgatactcctttgcatattgctgcagcttctgg |
214 |
Q |
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| T |
48730362 |
acttgctattcaaactgattcaaatcgatccttacatcttagaacgctataatttaataccatttgttgatactcctttgcatattgctgcagcttctgg |
48730263 |
T |
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| Q |
215 |
acatacaagttttgccactgagattatgagactaaaaccttcatttgcttggaaactaaacgagtatggactcagtcccatacatcttgctttacaaaac |
314 |
Q |
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| T |
48730262 |
acatacaagttttgccactgagattatgagactaaaaccttcatttgcttggaaactaaacgagtatggactcagtcccatacatcttgctttacaaaac |
48730163 |
T |
|
| Q |
315 |
aaatatcacagaatggtttgtcgctttgtagatattaataaagatcttgtccgagtcaaagggatagagggtctaactccattgcatattgctactcaaa |
414 |
Q |
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| T |
48730162 |
aaatatcacagaatggtttgtcgctttgtagatattaataaagaccttgtccgagtcaaagggagagagggtctaactccattgcatattgctactcaaa |
48730063 |
T |
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| Q |
415 |
ctggaaactttgatcttgtagtaaaattcctgtctgtttgtccaggttgtattgatgatgt |
475 |
Q |
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| T |
48730062 |
ctggaaactttgatcttgtagtaaaattcctgtttgtttgtccaggttgtattgaagatgt |
48730002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 166 - 316
Target Start/End: Original strand, 4818941 - 4819091
Alignment:
| Q |
166 |
atttaataccatttgttgatactcctttgcatattgctgcagcttctggacatacaagttttgccactgagattatgagactaaaaccttcatttgcttg |
265 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| || || ||| |||||| | |||||||||| ||||||||||||||||||| |
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| T |
4818941 |
atttaataccatttgttgaaactcctttgcatattgctgcatctatgggtcatctccaatttgcctccgagattatgaagttaaaaccttcatttgcttg |
4819040 |
T |
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| Q |
266 |
gaaactaaacgagtatggactcagtcccatacatcttgctttacaaaacaa |
316 |
Q |
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| T |
4819041 |
gaagctaaatcaacaaggattcagtcctatccatcttgctatgcaaaacaa |
4819091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 274
Target Start/End: Complemental strand, 31040851 - 31040743
Alignment:
| Q |
166 |
atttaataccatttgttgatactcctttgcatattgctgcagcttctggacatacaagttttgccactgagattatgagactaaaaccttcatttgcttg |
265 |
Q |
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||||||| ||||||||||| |||||| ||||||| |||||| || |||||| ||||||||||| ||||||||| | |||||||||||||| || |
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| T |
31040851 |
atttaattccatttgttgaaactcctctgcatatagctgcatctatgggacatgttcaatttgccactgaaattatgagattgaaaccttcatttgcatg |
31040752 |
T |
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| Q |
266 |
gaaactaaa |
274 |
Q |
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||| ||||| |
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| T |
31040751 |
gaagctaaa |
31040743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 31076001 - 31075952
Alignment:
| Q |
225 |
tttgccactgagattatgagactaaaaccttcatttgcttggaaactaaa |
274 |
Q |
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| T |
31076001 |
tttgccactgaaattatgagattgaaaccttcatttgctttgaagctaaa |
31075952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 28865156 - 28865196
Alignment:
| Q |
166 |
atttaataccatttgttgatactcctttgcatattgctgca |
206 |
Q |
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| T |
28865156 |
atttaataccatttgttgaaactcctttacatatcgctgca |
28865196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 30648008 - 30648044
Alignment:
| Q |
170 |
aataccatttgttgatactcctttgcatattgctgca |
206 |
Q |
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| T |
30648008 |
aataccatttgttgaaactcctttacatattgctgca |
30648044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 305
Target Start/End: Complemental strand, 26087599 - 26087519
Alignment:
| Q |
225 |
tttgccactgagattatgagactaaaaccttcatttgcttggaaactaaacgagtatggactcagtcccatacatcttgct |
305 |
Q |
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| T |
26087599 |
tttgccactgaaattatgaatttgaaaccttcatatgcttggaaactaaatcagcaaggattcagtcccatccatcttgct |
26087519 |
T |
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