View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19875_low_5 (Length: 414)
Name: NF19875_low_5
Description: NF19875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19875_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 4328642 - 4328296
Alignment:
| Q |
19 |
agttacatagattaatctatttatatatttagaacacacttaaactctcaactgataaaattgtgtacactaaagttagagatcaaacctc--tgtttaa |
116 |
Q |
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| T |
4328642 |
agttacatagattaatctatttatatatttagaacacacttaaactctcaactgataaaattgtgtacactaaagttagagatcaaacctctatgtttaa |
4328543 |
T |
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| Q |
117 |
gagacttgctactcctcactcgaatcaaaccacatcagtttgatagcctaaccaagaataatttaaagttacataattgaacaa-nnnnnnnngaataag |
215 |
Q |
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| T |
4328542 |
gagacttgctactcctcactcgaatcaaaccacatcagtttgatagcctaaccaagaataatttaaagttacataattgaacaatttttttttgaataag |
4328443 |
T |
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| Q |
216 |
ctaaataacataattgaacaattacatgaagttcctcttccataacttaacctttatctactcatgatgtataaacacatattaatacaaacataagaaa |
315 |
Q |
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| T |
4328442 |
ctaaataacataattgaacaattacatgaagttcctcttccataacttaacctttatctactcatgatgtataaacatatattaatacaaacataagaaa |
4328343 |
T |
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| Q |
316 |
agaatcaccggtggatgcttcctttcctccagaagtgcttcgatcac |
362 |
Q |
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| T |
4328342 |
agaatcactagtggatgcttcctttgctccagaagtgcttcgatcac |
4328296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 332
Target Start/End: Original strand, 30041255 - 30041285
Alignment:
| Q |
302 |
acaaacataagaaaagaatcaccggtggatg |
332 |
Q |
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| T |
30041255 |
acaaacataagaaaagaatcaccggtggatg |
30041285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 30041209 - 30041245
Alignment:
| Q |
268 |
tttatctactcatgatgtataaacacatattaataca |
304 |
Q |
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| T |
30041209 |
tttagctactcatgttgtataaacacatattaataca |
30041245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 304
Target Start/End: Complemental strand, 24131738 - 24131702
Alignment:
| Q |
268 |
tttatctactcatgatgtataaacacatattaataca |
304 |
Q |
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| T |
24131738 |
tttacctactcatgatgtataaacacacattaataca |
24131702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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