View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19875_low_6 (Length: 391)
Name: NF19875_low_6
Description: NF19875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19875_low_6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 3 - 391
Target Start/End: Original strand, 47806586 - 47806974
Alignment:
| Q |
3 |
aaggcaaagaagaaaaacaaaatgactccaatggaaatgaagattattcaggtatgcataagccaaacaaacggaagcggtatagttcagggcaattcgt |
102 |
Q |
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| T |
47806586 |
aaggcgaagaagaaaaacaaaatgactccaatggaaatgaaggttattcaggtatgcataagccgaacaaacggaagcgctatagttcaggggaattcgt |
47806685 |
T |
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| Q |
103 |
tggatgggcatcaggacctctctctagtttcctggcatccatagggagatatgaaaccgaaccaatgatgcgaagggatgtaaaatctctcatgtttgaa |
202 |
Q |
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| T |
47806686 |
tggatgggcatcaggacctctctctagtttcctggcatccatagggagatatgaaaccgaaccaatgatgcgaagggatgtaaaatctctcatgtttgaa |
47806785 |
T |
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| Q |
203 |
tacattacagagaaaaatctttatcatcataaagacaagaaaaaattcttccctgacgataagttgtttccaatctttaaaaagaaagtcatgtcaaagt |
302 |
Q |
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| T |
47806786 |
tacattacagagaaaaatctttatcatcataaagacaagaaaaaattcttccctgacgataagttgtttccaatctttaaaaagaaagtcatgtcaaagt |
47806885 |
T |
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| Q |
303 |
acaagatatatcccctactcaagtttcatattgcggaaagatctgttgattcggctggaaaggaaaatcacgaccaaaacaaaaattgt |
391 |
Q |
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| T |
47806886 |
acaagatatatcccctactcaagtttcatattgcggaaagatctgttgattcggctggaaaggaaaatcacgaccaaaacaaaaattgt |
47806974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 40 - 391
Target Start/End: Original strand, 47804079 - 47804430
Alignment:
| Q |
40 |
tgaagattattcaggtatgcataagccaaacaaacggaagcggtatagttcagggcaattcgttggatgggcatcaggacctctctctagtttcctggca |
139 |
Q |
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| T |
47804079 |
tgaagaatatacaggtgtgcataagctgaagaaacagaatcggtatagttcaatggaatttgtcggatgggcatcaagacctctatctagcttccttgca |
47804178 |
T |
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| Q |
140 |
tccatagggagatatgaaaccgaaccaatgatgcgaagggatgtaaaatctctcatgtttgaatacattacagagaaaaatctttatcatcataaagaca |
239 |
Q |
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| T |
47804179 |
tccatagggagatacaaaaccgaaccaatgatgcaatggggaataagatctctcatatatgaatacattaaggagaaaaatctttaccatcccaaagaca |
47804278 |
T |
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| Q |
240 |
agaaaaaattcttccctgacgataagttgtttccaatctttaaaaagaaagtcatgtcaaagtacaagatatatcccctactcaagtttcatattgcgga |
339 |
Q |
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| T |
47804279 |
agaggaaattcctccctgatgacaagttgtttcctatatttaaaaagaaagctgtgttgaagtctcagatatattctctactcgagtttcacattgcgaa |
47804378 |
T |
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| Q |
340 |
aagatctgttgattcggctggaaaggaaaatcacgaccaaaacaaaaattgt |
391 |
Q |
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| T |
47804379 |
aaattcagatgattcatctagaaaggaaaatcacgatgaaaaaaaaaattgt |
47804430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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