View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19875_low_9 (Length: 279)

Name: NF19875_low_9
Description: NF19875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19875_low_9
NF19875_low_9
[»] chr4 (14 HSPs)
chr4 (23-270)||(2621028-2621275)
chr4 (24-165)||(2367648-2367789)
chr4 (36-135)||(2486265-2486364)
chr4 (22-118)||(5106333-5106429)
chr4 (68-133)||(2547522-2547587)
chr4 (24-145)||(12124770-12124891)
chr4 (23-121)||(2472037-2472135)
chr4 (23-135)||(2491073-2491185)
chr4 (23-118)||(5102106-5102201)
chr4 (24-118)||(2519179-2519273)
chr4 (24-165)||(2373212-2373352)
chr4 (51-135)||(2525730-2525814)
chr4 (90-132)||(1517029-1517071)
chr4 (50-138)||(12126852-12126940)
[»] chr7 (1 HSPs)
chr7 (23-118)||(2576415-2576510)
[»] chr1 (1 HSPs)
chr1 (23-121)||(15837979-15838077)
[»] chr5 (1 HSPs)
chr5 (90-146)||(12846948-12847004)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 2621275 - 2621028
Alignment:
Q  23 agggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggac 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2621275 agggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggat 2621176  T
Q  123 acgagggagagaggttccaagtaatggttgttgtcgccgtcgtcaactaacttgaagatacactcccaccactcctctggtaagaatgaacatgtttccg 222  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621175 acgagggagagaggttcccagtaatggttgttgtcgccatcgtcaactaacttgaagatacactcccaccactcctctggtaagaatgaacatgtttccg 2621076  T
Q  223 ccattgtttttggaatattgaatgtcaatgattatgataatgatgatg 270  Q
    ||||||||| |||||||||| |||||||| | ||||| ||||||||||    
T  2621075 ccattgtttgtggaatattggatgtcaataactatgacaatgatgatg 2621028  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 2367789 - 2367648
Alignment:
Q  24 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggaca 123  Q
    |||||||| | ||| ||||||  || ||||||||| ||||||||||| ||||  |||||||| || ||||||||||||||||| | ||| |||||||| |    
T  2367789 gggaacctttggaaaaggcgataaaggaaagggattgttttatcggacattgctatggagaatcggagacggttggtgatggagagaaattgtttggaga 2367690  T
Q  124 cgagggagagaggttccaagtaatggttgttgtcgccgtcgt 165  Q
    ||| ||| ||||||||||||||  |||||||||||| |||||    
T  2367689 cgatggaaagaggttccaagtagcggttgttgtcgctgtcgt 2367648  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 2486265 - 2486364
Alignment:
Q  36 aagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagag 135  Q
    ||||| ||| ||| ||||||||| ||||| |||||||||||||  ||||| || ||||||||||||||||||| ||||||||| || |||||||||||||    
T  2486265 aagagacgatgaaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttggtgatggacagaaactgttttgagacgagggagagag 2486364  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 5106429 - 5106333
Alignment:
Q  22 aagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 118  Q
    |||||||||| | |||||||||| |||||||||||||||||| ||  | ||||||||  ||||| ||  ||||||||||||||||||||||||||||    
T  5106429 aagggaaccttttgaagaggcgatgaatgaaagggatggtttgattagtgattgtgaccgagaatcgaggacggttggtgatggacaaaaactgttt 5106333  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 2547522 - 2547587
Alignment:
Q  68 ggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagag 133  Q
    |||||||||||  |||||||| ||||||||||||||||||| |||||||||||| |||| ||||||    
T  2547522 ggagattgtgactgagaaccggagacggttggtgatggacagaaactgtttggagacgatggagag 2547587  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 12124770 - 12124891
Alignment:
Q  24 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggaca 123  Q
    |||||||| | |||||||||   || ||||||||| |||| ||| ||||||| |||||| ||  | ||||||||||||||||| | ||| |||||||| |    
T  12124770 gggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggaaaattggagacggttggtgatggagagaaattgtttggaga 12124869  T
Q  124 cgagggagagaggttccaagta 145  Q
    | | ||||||||||||||||||    
T  12124870 caatggagagaggttccaagta 12124891  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 2472037 - 2472135
Alignment:
Q  23 agggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgga 121  Q
    ||||||||| ||||||||| || ||| ||||||||| |||| |  | ||||||||| |||||| |  ||||| ||||||||||| ||||||||||||||    
T  2472037 agggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcagagacgattggtgatggagaaaaactgtttgga 2472135  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 2491073 - 2491185
Alignment:
Q  23 agggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggac 122  Q
    ||||||||| || ||||| |||  || ||||||||| |||  ||||||||||||||  || || || |||||||| |||||||||| ||||||||| ||     
T  2491073 agggaacctttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaaactgttttgag 2491172  T
Q  123 acgagggagagag 135  Q
    ||||| |||||||    
T  2491173 acgagtgagagag 2491185  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 5102201 - 5102106
Alignment:
Q  23 agggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 118  Q
    ||||||||| ||||| ||| ||||||||||||||||||||  ||| | ||||||||  ||||| || ||||  || ||||| ||||||||||||||    
T  5102201 agggaacctttcgaaaaggagaggaatgaaagggatggttcgatcagtgattgtgaccgagaatcgaagactattagtgatagacaaaaactgttt 5102106  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 2519179 - 2519273
Alignment:
Q  24 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 118  Q
    |||||||| || ||||| ||| ||| ||||||||| |||| ||| ||||||||||  ||| | || | ||||||||||||||||| |||||||||    
T  2519179 gggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcgaaaacggttggtgatggacagaaactgttt 2519273  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 2373352 - 2373212
Alignment:
Q  24 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggaca 123  Q
    |||||||| | ||||||||||  || |||||| || ||||||||| | ||||  |||||||| || ||| | ||||||||||| | ||| |||||||| |    
T  2373352 gggaacctttggaagaggcgattaaggaaaggaattgttttatcg-acattgctatggagaatcggagatgattggtgatggagagaaattgtttggaaa 2373254  T
Q  124 cgagggagagaggttccaagtaatggttgttgtcgccgtcgt 165  Q
    | | |||||||||||| |||||  || |||||| ||||||||    
T  2373253 caacggagagaggttcgaagtagcggctgttgttgccgtcgt 2373212  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 2525730 - 2525814
Alignment:
Q  51 aaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagag 135  Q
    |||||||| |||  || |||||||||||   |||| || |||| |||||||||||||| ||||||||| || |||||||||||||    
T  2525730 aaagggatagttgcattggagattgtgaccaagaatcgaagactgttggtgatggacagaaactgttttgagacgagggagagag 2525814  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 1517071 - 1517029
Alignment:
Q  90 agacggttggtgatggacaaaaactgtttggacacgagggaga 132  Q
    |||||||||||||||||||| || |||||||| ||||||||||    
T  1517071 agacggttggtgatggacaagaattgtttggaaacgagggaga 1517029  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 12126852 - 12126940
Alignment:
Q  50 gaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagaggtt 138  Q
    |||||||||  ||| ||| |||| || |||||||||  | ||||||||||||||||| | ||| |||||||| || | |||||||||||    
T  12126852 gaaagggattttttcatctgagactgcgatggagaataggagacggttggtgatggagagaaattgtttggagacaatggagagaggtt 12126940  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 2576510 - 2576415
Alignment:
Q  23 agggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 118  Q
    ||||| ||| ||||||||||||  ||||||||||||||||  ||||| ||||||||  ||||| || ||||| ||||||||||| |||||||||||    
T  2576510 agggatcctttcgaagaggcgacaaatgaaagggatggttcaatcggtgattgtgaccgagaatcgaagacgattggtgatggataaaaactgttt 2576415  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 15838077 - 15837979
Alignment:
Q  23 agggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgga 121  Q
    ||||||||| | |||||||  ||||||||||||||| |||| |||   |||| ||| |||||| || ||||||||||||||||| | ||||||||||||    
T  15838077 agggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatggagagaaactgtttgga 15837979  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 12846948 - 12847004
Alignment:
Q  90 agacggttggtgatggacaaaaactgtttggacacgagggagagaggttccaagtaa 146  Q
    ||||||||||||||||| |  ||||| ||||| |||||||||||| |||||||||||    
T  12846948 agacggttggtgatggagaggaactgcttggaaacgagggagagatgttccaagtaa 12847004  T

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