View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19876_high_3 (Length: 227)
Name: NF19876_high_3
Description: NF19876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19876_high_3 |
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| [»] chr5 (3 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 23958695 - 23958474
Alignment:
| Q |
1 |
cataaaccagtaaaactgtgaatgaagtggtagtgtgctttatgaacaaagagtggtcaccattggattgagtatagtgattttcnnnnnnnnnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
23958695 |
cataaaccagtaaaactgtgaatgaagtggtagtgtgctttatgaacaaagagtggccagaattggattgagtatagtgatttt------gaagaagaag |
23958602 |
T |
|
| Q |
101 |
nnnnntaagtttctcatacaacttcctgctagcttgcttgagaccatagagtgatttgagaagtttacggacttgatttggttt-gaagtagtgatacct |
199 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
23958601 |
agaggtaagtttctcatacaacttcctgctagcttgctttagaccatagagtgatttgagaagtttacagacttgatttggtttggaagtagtgatacct |
23958502 |
T |
|
| Q |
200 |
tgaggaacaagcatgtatacatattctt |
227 |
Q |
| |
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|||||||||||||||||||||| ||||| |
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| T |
23958501 |
tgaggaacaagcatgtatacatcttctt |
23958474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 20322903 - 20322954
Alignment:
| Q |
106 |
taagtttctcatacaacttcctgctagcttgcttgagaccatagagtgattt |
157 |
Q |
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| T |
20322903 |
taagtttatcataccacttcctacttgcttgcttgagaccatagagggattt |
20322954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 9845788 - 9845865
Alignment:
| Q |
108 |
agtttctcatacaacttcctgctagcttgcttgagaccatagagtgatttgagaagtttacggacttgatttggtttg |
185 |
Q |
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| T |
9845788 |
agtttctcataccattgtctgctagcttgtttgagtccatagagtgacttaacaagtttacaaacttgattaggtttg |
9845865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 20850707 - 20850827
Alignment:
| Q |
108 |
agtttctcatacaacttcctgctagcttgcttgagaccatagagtgatttgagaagtttacggacttgatttggttt-gaagtagtgataccttgaggaa |
206 |
Q |
| |
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|||||||||||| |||| ||||| |||||||| ||| |||| ||||||||||||||||||| || | ||||||||| ||||| ||||| |||||||||| |
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| T |
20850707 |
agtttctcataccactttctgcttgcttgcttaagaacatatagtgatttgagaagtttacaaacctaatttggtttggaagtggtgatgccttgaggaa |
20850806 |
T |
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| Q |
207 |
caagcatgtatacatattctt |
227 |
Q |
| |
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|||||| || |||| ||||| |
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| T |
20850807 |
taagcatataaacatcttctt |
20850827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 20850617 - 20850686
Alignment:
| Q |
12 |
aaaactgtgaatgaagtggtagtgtgctttatgaacaaagagtggtcaccattggattgagtatagtgat |
81 |
Q |
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|||||| |||||||||||| ||| | |||||||||||||||||||||| |||| ||||| |||||||||| |
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| T |
20850617 |
aaaactatgaatgaagtggcagttttctttatgaacaaagagtggtcagcatttgattgggtatagtgat |
20850686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 34068233 - 34068117
Alignment:
| Q |
106 |
taagtttctcatacaacttcctgctagcttgcttgagaccatagagtgatttgagaagtttacggacttgatttggtttg-aagtagtgataccttgagg |
204 |
Q |
| |
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|||||||||||||| |||| || || || || || | |||||||||||||| | ||||| | ||| ||||| |||||| ||| ||||||||||||||| |
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| T |
34068233 |
taagtttctcataccactttctactggcctgtttcaatccatagagtgatttaactagtttgctgacctgattgggtttggaaggagtgataccttgagg |
34068134 |
T |
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| Q |
205 |
aacaagcatgtatacat |
221 |
Q |
| |
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|||||||||||| |||| |
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| T |
34068133 |
aacaagcatgtaaacat |
34068117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 31961682 - 31961565
Alignment:
| Q |
111 |
ttctcatacaacttcctgctagcttgcttgagaccatagagtgatttgagaagtttacggacttgatttgg-tttgaagtagtgataccttgaggaacaa |
209 |
Q |
| |
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||||||||| |||| |||||||||||||| |||||||| || ||||| | ||||| | ||||||||| || |||| ||| ||| ||||||||| |||| |
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| T |
31961682 |
ttctcataccactttctgctagcttgcttaagaccataaagagatttcatgagtttgcagacttgattgggttttgtagtgttgacaccttgaggcacaa |
31961583 |
T |
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| Q |
210 |
gcatgtatacatattctt |
227 |
Q |
| |
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|||||| |||| ||||| |
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| T |
31961582 |
tcatgtacacatcttctt |
31961565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 8853627 - 8853573
Alignment:
| Q |
174 |
tgatttggtttg-aagtagtgataccttgaggaacaagcatgtatacatattctt |
227 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
8853627 |
tgatttggtttggaagtagtgataccttgaggaacaagcatgtaaacatcttctt |
8853573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 4644918 - 4644966
Alignment:
| Q |
174 |
tgatttggtttg-aagtagtgataccttgaggaacaagcatgtatacat |
221 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||| |||| |
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| T |
4644918 |
tgatttggtttgcaagtagtgataccttgaggaacaatcatgtaaacat |
4644966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 18963547 - 18963661
Alignment:
| Q |
114 |
tcatacaacttcctgctagcttgcttgagaccatagagtgatttgagaagtttacggacttgatttggttt-gaagtagtgataccttgaggaacaagca |
212 |
Q |
| |
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|||||| |||| |||||||||||||||||| |||| || ||||| | || || | |||||||| ||||| |||||||||| |||||| || ||||||| |
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| T |
18963547 |
tcataccactttctgctagcttgcttgagaacataaagagattttaagagctttcaaacttgattaggtttggaagtagtgacaccttgtggtacaagca |
18963646 |
T |
|
| Q |
213 |
tgtatacatattctt |
227 |
Q |
| |
|
| || |||| ||||| |
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| T |
18963647 |
tatacacatcttctt |
18963661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 16988036 - 16987933
Alignment:
| Q |
111 |
ttctcatacaacttcctgctagcttgcttgagaccatagagtgatttgagaagtttacggacttgatttggttt-gaagtagtgataccttgaggaacaa |
209 |
Q |
| |
|
||||||||| |||| ||||| ||||| || ||||||||||| ||||| | ||||| | |||||||||||||| || | |||||| ||||| ||||||| |
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| T |
16988036 |
ttctcataccactttctgcttgcttgtttaagaccatagagggatttaatgagtttgcaaacttgatttggtttggagggagtgatgccttgtggaacaa |
16987937 |
T |
|
| Q |
210 |
gcat |
213 |
Q |
| |
|
|||| |
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|
| T |
16987936 |
gcat |
16987933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 28155294 - 28155349
Alignment:
| Q |
123 |
ttcctgctagcttgcttgagaccatagagtgatttgagaagtttacggacttgatt |
178 |
Q |
| |
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|||||||||| |||||||||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
28155294 |
ttcctgctaggttgcttgagaccatagagagatttatgaagtttacaaacttgatt |
28155349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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