View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19876_low_1 (Length: 773)
Name: NF19876_low_1
Description: NF19876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19876_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 726; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 14 - 763
Target Start/End: Complemental strand, 33236508 - 33235760
Alignment:
| Q |
14 |
atctccccctttcaaagcacatgagtaaccaaaccttgccaaaataatttcagaagtgattgttaacgtccactttaaaaggaagaaacagagacaaaga |
113 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33236508 |
atctcccccttccaaagcacatgagtaaccaaaccttgccaaaataatttcagaagtgattgttaacgtccactttaaaaggaagaaacagagacaaaga |
33236409 |
T |
|
| Q |
114 |
cagaacaatgtcctgccaaacacggaatgtacatatagccacttacaaaggataaaactaggtcaatggtggaaaatatgcaaaaataacactattaact |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33236408 |
cagaacaatgtcctgccaaacacggaatgtacatatagccacttacaaaggataaaactaggtcaatggtggaaaatatgcaaaaataacactattaact |
33236309 |
T |
|
| Q |
214 |
ccctatacactgccaagtgtgttccatttcaaccaccctaacaatcaatcatcatcatataatagtatatatgcaaaaccatgcaaaattatattattat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33236308 |
ccctatacactgccaagtgtgttccatttcaaccaccctaacaatcaatcatcatcatataatagtatatatgcaaaaccatgcaaaattatattattat |
33236209 |
T |
|
| Q |
314 |
ctagtattagatcataataactaattttcttacacattaattaatttctacactcctctatcacatatctttatctctcatttttcaattacacacctat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33236208 |
ctagtattagatcataataactaattttcttacacattaattaatttctacactcctctatcacatatctttatctctcatttttcaattacacacctat |
33236109 |
T |
|
| Q |
414 |
tacattattttctcctcaaagtgtgattaccataaggggtgagaaattaatcatcatacacacatattttttaatgaatgattacataatagaacaagca |
513 |
Q |
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| T |
33236108 |
tacattattttctcctcaaagtgtgattaccataaggggtgagaaattaatcatcatacacacatat-ttttaatgaatgattacataatagaacaagca |
33236010 |
T |
|
| Q |
514 |
tttggattttcatcactgaacatttcaacatagctatcatcaaaggtggactcttttatgttggaagtgtcaccaacctttctaaccatattaggaggtg |
613 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33236009 |
tttggattttcatcactgaacatttcaacatagctatcatcaaaggtggactcttttatgttggaagtgtcgccaacctttctaaccatattaggaggtg |
33235910 |
T |
|
| Q |
614 |
ctttcttatcataggcttgtgaaatataaggatgagccaccatagtgtatggaacataaggccaaagctcaaccttcttctttgtagattgagcagcttt |
713 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33235909 |
ctttcttatcataggcttgtgaaatataaggatgagccaccatagtgtatggaacataaggccaaagctcaaccttcttctttgtagattgagcagcttt |
33235810 |
T |
|
| Q |
714 |
caacactttctttggttcaacatatccactcactgttactctctgctgct |
763 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
33235809 |
caacactttctttggttcaacatatccactcaccgttactttctgctgct |
33235760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 495 - 538
Target Start/End: Original strand, 40576991 - 40577034
Alignment:
| Q |
495 |
ttacataatagaacaagcatttggattttcatcactgaacattt |
538 |
Q |
| |
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| T |
40576991 |
ttacatgatagaacaagcatttggattttcatcactgaaaattt |
40577034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 609 - 679
Target Start/End: Complemental strand, 10652926 - 10652856
Alignment:
| Q |
609 |
aggtgctttcttatcataggcttgtgaaatataaggatgagccaccatagtgtatggaacataaggccaaa |
679 |
Q |
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| T |
10652926 |
aggtgctttcttgtcataagcttgagatatataaggataagccaccaagttgtatggaatatatggccaaa |
10652856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 496 - 533
Target Start/End: Complemental strand, 9699770 - 9699733
Alignment:
| Q |
496 |
tacataatagaacaagcatttggattttcatcactgaa |
533 |
Q |
| |
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||||||| |||||||||||||||||| ||||||||||| |
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| T |
9699770 |
tacataacagaacaagcatttggattctcatcactgaa |
9699733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 538
Target Start/End: Original strand, 40787056 - 40787097
Alignment:
| Q |
497 |
acataatagaacaagcatttggattttcatcactgaacattt |
538 |
Q |
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|||||| |||||||||||| |||||||||||||| ||||||| |
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| T |
40787056 |
acataacagaacaagcattaggattttcatcactaaacattt |
40787097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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