View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19876_low_2 (Length: 250)
Name: NF19876_low_2
Description: NF19876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19876_low_2 |
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| [»] scaffold0230 (1 HSPs) |
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| [»] scaffold0511 (1 HSPs) |
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Alignment Details
Target: scaffold0230 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 5833 - 6072
Alignment:
| Q |
1 |
aattattgtacatgacagtgaggatcagaacaagttgtgtagtggctgaggaaaacaacaatattaacaattaatattagtactatagtgttacaagttg |
100 |
Q |
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| T |
5833 |
aattattgtacatgacagtgaggattagaacaagttgtgtagtggctgaggaaaacaacaatattaacaattaatattagtactatagtgttacaagttg |
5932 |
T |
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| Q |
101 |
ttaggaaaaaacaaagttgggaatcttttcatcatgtccgttcatttgttcagcgagtagtaaaattgttcgctttcaagtgtatgacttcattattgtt |
200 |
Q |
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| T |
5933 |
tgaggaaaaaacaaagttgggaatcttttcatcatgtccgttcatttgctctgtgagtagtaaaataattaactttcaagtgtatgatttcattattggt |
6032 |
T |
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| Q |
201 |
aattaaaaattagtgttctaatagtctctccgatcctatg |
240 |
Q |
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| T |
6033 |
atttaataatcagtgtagtaatagtctctcagatgctatg |
6072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 18586709 - 18586470
Alignment:
| Q |
1 |
aattattgtacatgacagtgaggatcagaacaagttgtgtagtggctgaggaaaacaacaatattaacaattaatattagtactatagtgttacaagttg |
100 |
Q |
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| T |
18586709 |
aattattgtacatgacagtgaggattagaacaagttgtgtagtggctgaggaaaacaacaatattaacaattaatattagtactatagtgttacaagttg |
18586610 |
T |
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| Q |
101 |
ttaggaaaaaacaaagttgggaatcttttcatcatgtccgttcatttgttcagcgagtagtaaaattgttcgctttcaagtgtatgacttcattattgtt |
200 |
Q |
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| T |
18586609 |
tgaggaaaaaacaaagttgggaatcttttcatcatgtccgttcatttgctctgtgagtagtaaaataattaactttcaagtgtatgatttcattattggt |
18586510 |
T |
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| Q |
201 |
aattaaaaattagtgttctaatagtctctccgatcctatg |
240 |
Q |
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| T |
18586509 |
atttaataatcagtgtagtaatagtctctcagatgctatg |
18586470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 18872196 - 18872016
Alignment:
| Q |
1 |
aattattgtacatgacagtgaggatcagaacaagttgtgtagtggctgaggaaaacaacaatattaacaattaatattagtactatagtgttacaagttg |
100 |
Q |
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| T |
18872196 |
aattattgtacatgagagtgaggattagaacaagttgtgtagtgg---------------atattaacaatgaatattagtactatagtgttacaagttg |
18872112 |
T |
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| Q |
101 |
ttaggaaaaaacaaagttgggaatcttttcatcatgtccgttcatttgttcagcgagtagtaaaattgttcgctttcaagtgtatgacttcattat |
196 |
Q |
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| T |
18872111 |
tgaggaaaaaacaaagttgggaatcttttcatcatgtccgttcatttgctctgtgagtagtaaaattgttcactttcaagtgtatgatttcattat |
18872016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 18805593 - 18805426
Alignment:
| Q |
73 |
aatattagtactatagtgttacaagttgttaggaaaaaacaaagttgggaatcttttcatcatgtccgttcatttgttcagcgagtagtaaaattgttcg |
172 |
Q |
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| T |
18805593 |
aatattagtactatagtgttacaagttgtgaggaaaaaacaaaattgggaatcttttcatcatgtccgtttatttgttcagttagtagtaaaattcttca |
18805494 |
T |
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| Q |
173 |
ctttcaagtgtatgacttcattattgttaattaaaaattagtgttctaatagtctctccgatcctatg |
240 |
Q |
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| T |
18805493 |
ctttcaagtgtatgatttcatcattggtaattaataattagttctgtagtagtctctctgatcctatg |
18805426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 18793532 - 18793476
Alignment:
| Q |
91 |
ttacaagttgttaggaaaaaacaaagttgggaatcttttcatcatgtccgttcattt |
147 |
Q |
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| T |
18793532 |
ttacaagttgtgaggaaaaaacaaagttgggaatcttttcatcatgtctgttcattt |
18793476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 10609 - 10665
Alignment:
| Q |
91 |
ttacaagttgttaggaaaaaacaaagttgggaatcttttcatcatgtccgttcattt |
147 |
Q |
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| T |
10609 |
ttacaagttgtgaggaaaaaacaaagttgggaatcttttcatcatgtctgttcattt |
10665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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