View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19876_low_3 (Length: 249)

Name: NF19876_low_3
Description: NF19876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19876_low_3
NF19876_low_3
[»] chr2 (3 HSPs)
chr2 (10-247)||(27035402-27035639)
chr2 (179-228)||(29500357-29500406)
chr2 (165-246)||(21808317-21808398)
[»] chr4 (3 HSPs)
chr4 (11-247)||(35088015-35088251)
chr4 (126-246)||(22644294-22644414)
chr4 (165-246)||(16987556-16987637)
[»] scaffold0329 (1 HSPs)
scaffold0329 (179-228)||(11994-12043)
[»] chr3 (2 HSPs)
chr3 (179-228)||(12286285-12286334)
chr3 (179-228)||(19585957-19586006)
[»] chr1 (1 HSPs)
chr1 (179-228)||(52778665-52778714)
[»] chr5 (1 HSPs)
chr5 (179-247)||(11925318-11925386)
[»] chr8 (1 HSPs)
chr8 (179-245)||(15886627-15886693)
[»] scaffold1416 (1 HSPs)
scaffold1416 (177-222)||(499-544)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 27035639 - 27035402
Alignment:
Q  10 aagaaaatcaactagaactagaagtgctccctctcatttacaagattatgttagtaataagtcctctacttctacatatcctatatccaattacatttcc 109  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27035639 aagaaaatcaactagaactagaagtgctccctctcatctacaagattatgttagtaataattcctctacttctacatatcctatatccaattacatttcc 27035540  T
Q  110 tataacaatgtgtttgctaatcatgcttcttttgttatttccttacaaactcattctgaaccaactacctatgctgaggcaagcaagcatgaatgttgga 209  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27035539 tataataatgtgtttgctaatcatgcttcttttgttatgtccttacaaactaattctgaaccaactacctatgctgaggcaagcaagcatgaatgttgga 27035440  T
Q  210 aacaagcaatgcaagttgagttattggctcttgagaag 247  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27035439 aacaagcaatgcaagttgagttattggctcttgagaag 27035402  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 29500357 - 29500406
Alignment:
Q  179 tatgctgaggcaagcaagcatgaatgttggaaacaagcaatgcaagttga 228  Q
    |||| |||||||||||||||||| ||||| |||||||| |||||||||||    
T  29500357 tatgttgaggcaagcaagcatgactgttgaaaacaagccatgcaagttga 29500406  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 21808398 - 21808317
Alignment:
Q  165 ctgaaccaactacctatgctgaggcaagcaagcatgaatgttggaaacaagcaatgcaagttgagttattggctcttgagaa 246  Q
    |||||||||| || |||||||||||||||||   ||| |||||||| ||||| ||| ||||||| || |  |||||||||||    
T  21808398 ctgaaccaaccacatatgctgaggcaagcaaatttgattgttggaagcaagctatgaaagttgaattgtctgctcttgagaa 21808317  T

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Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 35088015 - 35088251
Alignment:
Q  11 agaaaatcaactagaactagaagtgctccctctcatttacaagattatgttagtaataagtcctctacttctacatatcctatatccaattacatttcct 110  Q
    |||||||||||||||||||||  ||||||||| |||||||||||||||||| ||||||| || |||||| |||||||||||||||||||||||||||| |    
T  35088015 agaaaatcaactagaactagacatgctccctcccatttacaagattatgtttgtaataattcatctactactacatatcctatatccaattacatttctt 35088114  T
Q  111 ataacaatgtgtttgctaatcatgcttcttttgttatttccttacaaactcattctgaaccaactacctatgctgaggcaagcaagcatgaatgttggaa 210  Q
    |||| ||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35088115 ataataatgtgtctgctaatcatgcttcctttgttctttccttacaatctcattctgaaccaactacctatgctgaggcaagcaagcatgaatgttggaa 35088214  T
Q  211 acaagcaatgcaagttgagttattggctcttgagaag 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  35088215 acaagcaatgcaagttgagttattggctcttgagaag 35088251  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 22644294 - 22644414
Alignment:
Q  126 ctaatcatgcttcttttgttatttccttacaaactcattctgaaccaactacctatgctgaggcaagcaagcatgaatgttggaaacaagcaatgcaagt 225  Q
    ||||||||||||||||| ||   || |||||||||  | ||||||| ||||| |||| |||||||||||| ||||| ||||||||  |||| |||||||     
T  22644294 ctaatcatgcttcttttatttcatctttacaaactactcctgaacctactacatatgttgaggcaagcaaacatgattgttggaataaagctatgcaagc 22644393  T
Q  226 tgagttattggctcttgagaa 246  Q
    |||||||||||| ||||||||    
T  22644394 tgagttattggcacttgagaa 22644414  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 16987556 - 16987637
Alignment:
Q  165 ctgaaccaactacctatgctgaggcaagcaagcatgaatgttggaaacaagcaatgcaagttgagttattggctcttgagaa 246  Q
    |||||||||| || |||||||||||||||||   ||| |||||||| ||||| ||| ||||||| || |  |||||||||||    
T  16987556 ctgaaccaaccacatatgctgaggcaagcaaatttgattgttggaaccaagctatgaaagttgaattgtctgctcttgagaa 16987637  T

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Target: scaffold0329 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 11994 - 12043
Alignment:
Q  179 tatgctgaggcaagcaagcatgaatgttggaaacaagcaatgcaagttga 228  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||||||    
T  11994 tatgctgaagcaagcaagcatgattgttggaaacaagccatgcaagttga 12043  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 12286285 - 12286334
Alignment:
Q  179 tatgctgaggcaagcaagcatgaatgttggaaacaagcaatgcaagttga 228  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||||||    
T  12286285 tatgctgaagcaagcaagcatgattgttggaaacaagccatgcaagttga 12286334  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 19586006 - 19585957
Alignment:
Q  179 tatgctgaggcaagcaagcatgaatgttggaaacaagcaatgcaagttga 228  Q
    |||||||| |||||||||||||| | |||||||||||| |||||||||||    
T  19586006 tatgctgaagcaagcaagcatgatttttggaaacaagccatgcaagttga 19585957  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 52778665 - 52778714
Alignment:
Q  179 tatgctgaggcaagcaagcatgaatgttggaaacaagcaatgcaagttga 228  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||||||    
T  52778665 tatgctgaagcaagcaagcatgattgttggaaacaagccatgcaagttga 52778714  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 11925318 - 11925386
Alignment:
Q  179 tatgctgaggcaagcaagcatgaatgttggaaacaagcaatgcaagttgagttattggctcttgagaag 247  Q
    |||| ||||||||| |||||||| |||||||||||||| ||||||||| |  ||||||||||| |||||    
T  11925318 tatgttgaggcaagaaagcatgattgttggaaacaagcgatgcaagttaaactattggctcttaagaag 11925386  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 15886693 - 15886627
Alignment:
Q  179 tatgctgaggcaagcaagcatgaatgttggaaacaagcaatgcaagttgagttattggctcttgaga 245  Q
    ||||||||||||||||||||||| || ||||| ||||| |||||||||||  |||  ||||||||||    
T  15886693 tatgctgaggcaagcaagcatgattgctggaatcaagctatgcaagttgaactatcagctcttgaga 15886627  T

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Target: scaffold1416 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 544 - 499
Alignment:
Q  177 cctatgctgaggcaagcaagcatgaatgttggaaacaagcaatgca 222  Q
    |||||| |||||||| ||| ||||| ||||||||||||||||||||    
T  544 cctatgatgaggcaatcaaacatgactgttggaaacaagcaatgca 499  T

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