View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19876_low_5 (Length: 228)

Name: NF19876_low_5
Description: NF19876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19876_low_5
NF19876_low_5
[»] chr2 (4 HSPs)
chr2 (1-225)||(27034975-27035203)
chr2 (122-190)||(21808014-21808082)
chr2 (134-186)||(4941812-4941864)
chr2 (134-186)||(5026892-5026944)
[»] chr4 (3 HSPs)
chr4 (80-225)||(35088421-35088566)
chr4 (113-186)||(23166373-23166446)
chr4 (122-190)||(16987872-16987940)
[»] scaffold0329 (1 HSPs)
scaffold0329 (80-186)||(12300-12406)
[»] chr1 (2 HSPs)
chr1 (80-186)||(52778971-52779077)
chr1 (152-226)||(13083649-13083723)
[»] chr3 (3 HSPs)
chr3 (80-186)||(12297691-12297797)
chr3 (80-186)||(19585594-19585700)
chr3 (119-189)||(18963637-18963707)
[»] chr6 (1 HSPs)
chr6 (158-204)||(12302090-12302136)
[»] chr8 (1 HSPs)
chr8 (127-188)||(15886331-15886392)
[»] chr5 (1 HSPs)
chr5 (109-186)||(9845874-9845951)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 27034975 - 27035203
Alignment:
Q  1 tcatcaaaacagatgcttgaacataatgatgttgaagcaaaacaaatgtcaatttttcataccacttcctattggcttattgcaaacctgattggattta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27034975 tcatcaaaacagatgcttgaacataatgatgttgaagcaaaacatatgtcaatttttcataccacttcctattggcttattgcaaacctgattggattta 27035074  T
Q  101 atagtttggatgccaggaggta----caagcatataaacatcctcttgtaaatcaccatgcataaatgcattgttgacatctagttgatgaatgaactag 196  Q
    ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  27035075 atagtttggatgccaggaggtacaagcaagcatataaacatcctcttgtaaatcaccatgcataaatgcattgttgacatctagttggtgaatgaaccag 27035174  T
Q  197 ttgttgattgatgctaaagctctaacaag 225  Q
    ||||||||||||||||||||| |||||||    
T  27035175 ttgttgattgatgctaaagctataacaag 27035203  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 21808014 - 21808082
Alignment:
Q  122 acaagcatataaacatcctcttgtaaatcaccatgcataaatgcattgttgacatctagttgatgaatg 190  Q
    |||||||||||||| || ||||| | ||||||||| | ||| ||||| |||||||| ||||||||||||    
T  21808014 acaagcatataaacgtcttcttgcagatcaccatgtaaaaaagcattattgacatcaagttgatgaatg 21808082  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 4941812 - 4941864
Alignment:
Q  134 acatcctcttgtaaatcaccatgcataaatgcattgttgacatctagttgatg 186  Q
    ||||||||||| || |||||||| | |||||||||||| ||||| ||||||||    
T  4941812 acatcctcttgcaattcaccatgaagaaatgcattgtttacatcaagttgatg 4941864  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 5026892 - 5026944
Alignment:
Q  134 acatcctcttgtaaatcaccatgcataaatgcattgttgacatctagttgatg 186  Q
    ||||||||||| || |||||||| | |||||||||||| ||||| ||||||||    
T  5026892 acatcctcttgcaattcaccatgaagaaatgcattgtttacatcaagttgatg 5026944  T

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Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 80 - 225
Target Start/End: Complemental strand, 35088566 - 35088421
Alignment:
Q  80 ttgcaaacctgattggatttaatagtttggatgccaggaggtacaagcatataaacatcctcttgtaaatcaccatgcataaatgcattgttgacatcta 179  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  35088566 ttgcaaacctgattggatttaatggttttgatgccaggaggtacaagcatataaacatcctcttgtaaatcaccatgcagaaatgcattgttgacatcaa 35088467  T
Q  180 gttgatgaatgaactagttgttgattgatgctaaagctctaacaag 225  Q
    |||||||||||||| ||||||| ||||||||||||||| |||||||    
T  35088466 gttgatgaatgaaccagttgttaattgatgctaaagctataacaag 35088421  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 23166373 - 23166446
Alignment:
Q  113 ccaggaggtacaagcatataaacatcctcttgtaaatcaccatgcataaatgcattgttgacatctagttgatg 186  Q
    |||||||| || | |||||| ||||| ||||||||||| ||||||| ||| ||||| |||||||| ||||||||    
T  23166373 ccaggaggaaccatcatatacacatcttcttgtaaatctccatgcaaaaaggcattattgacatcaagttgatg 23166446  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 16987940 - 16987872
Alignment:
Q  122 acaagcatataaacatcctcttgtaaatcaccatgcataaatgcattgttgacatctagttgatgaatg 190  Q
    |||||||||||||| || ||||| | ||||||||| | ||| ||||| |||||||| ||||||||||||    
T  16987940 acaagcatataaacgtcttcttgcagatcaccatgtaaaaaggcattattgacatcaagttgatgaatg 16987872  T

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Target: scaffold0329 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 12406 - 12300
Alignment:
Q  80 ttgcaaacctgattggatttaatagtttggatgccaggaggtacaagcatataaacatcctcttgtaaatcaccatgcataaatgcattgttgacatcta 179  Q
    |||||||| ||||||| |||| ||| || |||||||||||| |  |||||||||||||| ||||||||||| ||||| | ||| |||||||| ||||| |    
T  12406 ttgcaaacttgattgggtttattagatttgatgccaggagggatgagcatataaacatcttcttgtaaatctccatgaagaaaagcattgtttacatcaa 12307  T
Q  180 gttgatg 186  Q
    |||||||    
T  12306 gttgatg 12300  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 52779077 - 52778971
Alignment:
Q  80 ttgcaaacctgattggatttaatagtttggatgccaggaggtacaagcatataaacatcctcttgtaaatcaccatgcataaatgcattgttgacatcta 179  Q
    |||||||| ||||||| |||| ||| || |||||||||||| |  |||||||||||||| ||||||||||| ||||| | ||| |||||||| ||||| |    
T  52779077 ttgcaaacttgattgggtttattagatttgatgccaggagggatgagcatataaacatcttcttgtaaatctccatgaagaaaagcattgtttacatcaa 52778978  T
Q  180 gttgatg 186  Q
    |||||||    
T  52778977 gttgatg 52778971  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 13083723 - 13083649
Alignment:
Q  152 ccatgcataaatgcattgttgacatctagttgatgaatgaactagttgttgattgatgctaaagctctaacaagt 226  Q
    ||||||| |||||||||||| |||||||| | ||| |  ||||||||||||||||| |||| |||  ||||||||    
T  13083723 ccatgcaaaaatgcattgtttacatctagctaatgtaaaaactagttgttgattgaagctagagcaataacaagt 13083649  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 12297797 - 12297691
Alignment:
Q  80 ttgcaaacctgattggatttaatagtttggatgccaggaggtacaagcatataaacatcctcttgtaaatcaccatgcataaatgcattgttgacatcta 179  Q
    |||||||| ||||||| |||| ||| || |||||||||||| |  |||||||||||||| ||||||||||| ||||| | ||| |||||| | ||||| |    
T  12297797 ttgcaaacttgattggttttattagatttgatgccaggagggaggagcatataaacatcttcttgtaaatctccatgaagaaaagcattgcttacatcaa 12297698  T
Q  180 gttgatg 186  Q
    |||||||    
T  12297697 gttgatg 12297691  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 19585594 - 19585700
Alignment:
Q  80 ttgcaaacctgattggatttaatagtttggatgccaggaggtacaagcatataaacatcctcttgtaaatcaccatgcataaatgcattgttgacatcta 179  Q
    |||||||| ||||||| |||| ||| || |||||||||||| |  |||||||||||||| ||||||||||| ||||| |  || |||||||| ||||| |    
T  19585594 ttgcaaacttgattgggtttattagatttgatgccaggagggaggagcatataaacatcttcttgtaaatctccatgaaggaaagcattgtttacatcaa 19585693  T
Q  180 gttgatg 186  Q
    |||||||    
T  19585694 gttgatg 19585700  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 18963637 - 18963707
Alignment:
Q  119 ggtacaagcatataaacatcctcttgtaaatcaccatgcataaatgcattgttgacatctagttgatgaat 189  Q
    |||||||||||||| ||||| ||||||||||||||||| | ||| ||||| || ||||||||||| |||||    
T  18963637 ggtacaagcatatacacatcttcttgtaaatcaccatgtagaaaagcattattcacatctagttggtgaat 18963707  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 12302136 - 12302090
Alignment:
Q  158 ataaatgcattgttgacatctagttgatgaatgaactagttgttgat 204  Q
    |||||||||||||| ||||||||||||||||||  ||||||||||||    
T  12302136 ataaatgcattgtttacatctagttgatgaatgtgctagttgttgat 12302090  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 15886331 - 15886392
Alignment:
Q  127 catataaacatcctcttgtaaatcaccatgcataaatgcattgttgacatctagttgatgaa 188  Q
    |||||||||||||||||| || |||||||| | ||| |||||||| ||||||| ||| ||||    
T  15886331 catataaacatcctcttgcaattcaccatgaagaaaggcattgttaacatctaattggtgaa 15886392  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 9845874 - 9845951
Alignment:
Q  109 gatgccaggaggtacaagcatataaacatcctcttgtaaatcaccatgcataaatgcattgttgacatctagttgatg 186  Q
    |||||||||||| |  | ||||||||||||||| | |||||| ||||||| ||| ||||| || ||||||| ||||||    
T  9845874 gatgccaggagggagcatcatataaacatcctcctttaaatctccatgcagaaaggcattatttacatctaattgatg 9845951  T

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