View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19876_low_7 (Length: 227)
Name: NF19876_low_7
Description: NF19876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19876_low_7 |
 | |
|
| [»] chr6 (14 HSPs) |
| |
|
| [»] scaffold0511 (1 HSPs) |
| |
|
| [»] scaffold0230 (1 HSPs) |
| |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0133 (2 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 18872668 - 18872453
Alignment:
| Q |
12 |
cgagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacat |
111 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18872668 |
cgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacat |
18872569 |
T |
|
| Q |
112 |
aggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtgagatt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18872568 |
aggcaacatcagtcagcttctgcagccaatctttcacaacacggcttgttagttgcttctcttcagcatcttggaggacagcacgaattgcggtgagatt |
18872469 |
T |
|
| Q |
212 |
tccacataacttttgt |
227 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
18872468 |
tccacatagcttttgt |
18872453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 18587186 - 18586971
Alignment:
| Q |
12 |
cgagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacat |
111 |
Q |
| |
|
|||||||||||| || |||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18587186 |
cgagccaaaatcatcttaggatggaaacgggtgatccacttgttgtctccatgtgcttttgattttattgtacaatcatccaatatatcgtcaagaacat |
18587087 |
T |
|
| Q |
112 |
aggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtgagatt |
211 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18587086 |
aagcaacatcagtcagcttctgcagccaatctttcacaacacggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtgagatt |
18586987 |
T |
|
| Q |
212 |
tccacataacttttgt |
227 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18586986 |
tccacataacttttgt |
18586971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 18794105 - 18793890
Alignment:
| Q |
12 |
cgagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacat |
111 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18794105 |
cgagccaaaatcttcttaggatgtaaacgggtgatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacat |
18794006 |
T |
|
| Q |
112 |
aggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtgagatt |
211 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
18794005 |
aggcaacatcagttagcttctgcagccaatctttcacaacacggcttgttatttgcttctcttcggcatcttgaaggacagcacgaattgcggtgagatt |
18793906 |
T |
|
| Q |
212 |
tccacataacttttgt |
227 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18793905 |
tccacataacttttgt |
18793890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 18870191 - 18869976
Alignment:
| Q |
12 |
cgagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacat |
111 |
Q |
| |
|
|||||||||||| || |||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18870191 |
cgagccaaaatcatcttaggatggaaactggtgatccacttgttgtctccatgtgcttttgattttattgtacaatcatccaatatatcatcaagaacat |
18870092 |
T |
|
| Q |
112 |
aggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtgagatt |
211 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18870091 |
aagcaacatcagtcagcttctgcagccaatctttcacaacacggctcgttatttgcttctcttcagcatcttggaggacagcctgaattgcggtgagatt |
18869992 |
T |
|
| Q |
212 |
tccacataacttttgt |
227 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
18869991 |
tccacatagcttttgt |
18869976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 17070184 - 17070379
Alignment:
| Q |
13 |
gagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacata |
112 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| || ||||||||| || ||||||||||||| ||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
17070184 |
gagccaaaatcttcattggatggaaacgggtgatgcacttgttgccttcatgtgcttttgaagttattgaacattcatccaatatatcatcaagtacata |
17070283 |
T |
|
| Q |
113 |
ggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtgag |
208 |
Q |
| |
|
||| ||||| || ||||||||||| | ||||||||||| ||||||||| ||||||| ||||||||||| || |||||||| |||| |||||| |
|
|
| T |
17070284 |
agcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttcttttcagcatcttttagtacagcacggattgtggtgag |
17070379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 16658686 - 16658889
Alignment:
| Q |
12 |
cgagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacat |
111 |
Q |
| |
|
||||||||||||||||||||||| |||| || || ||||||||| |||||||||||||||| ||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
16658686 |
cgagccaaaatcttcataggatgaaaactagtgatgcacttgttgcctccatgtgcttttgaagttattgaacattcatccaatatatcatcaagtacat |
16658785 |
T |
|
| Q |
112 |
aggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtgagatt |
211 |
Q |
| |
|
| ||| | ||| ||| || |||||||| | |||||| || | ||||||||||||||| ||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
16658786 |
aagcagcgtcacccagtttttgcagccagttcctcacaagatcgtttgttatttgcttcttttcagcatcttttagtacagcacgaattgcagtgagatt |
16658885 |
T |
|
| Q |
212 |
tcca |
215 |
Q |
| |
|
|||| |
|
|
| T |
16658886 |
tcca |
16658889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 16838358 - 16838529
Alignment:
| Q |
12 |
cgagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacat |
111 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| || ||||||||| || ||||||||||||| ||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
16838358 |
cgagccaaaatcttcattggatggaaacgggtgatgcacttgttgccttcatgtgcttttgaagttattgaacattcatccaatatatcatcaagtacat |
16838457 |
T |
|
| Q |
112 |
aggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatctt |
183 |
Q |
| |
|
| ||| ||||| || ||||||||||| | ||||||||||| ||||||||| ||||||| ||| ||||||| |
|
|
| T |
16838458 |
aagcagcatcacccaatttctgcagccattgtttcacaacattgcttgttatctgcttcttttcggcatctt |
16838529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 16788637 - 16788817
Alignment:
| Q |
7 |
cacgccgagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaag |
106 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||| ||| || |||||||||||||||||||||||||||||||||| ||| || ||||||| ||||||||| |
|
|
| T |
16788637 |
cacgctgagccaaaatcttcttaggaaggaaacgggtgatgcacttgttgtctccatgtgcttttgatgttattgaacattcgtccaataaatcatcaag |
16788736 |
T |
|
| Q |
107 |
aacataggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacgaatt |
200 |
Q |
| |
|
||||| ||| ||| |||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
16788737 |
aacatgagcagcat-------------cagccagtctttcacaacatgacttgttatttgcttctcttcagcatctttgaggacaacacgaatt |
16788817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 16797846 - 16798042
Alignment:
| Q |
12 |
cgagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacat |
111 |
Q |
| |
|
||||||||||| ||||| ||||| |||| ||| || ||||||||| || ||||||||||||| ||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
16797846 |
cgagccaaaattttcattggatgaaaacgggtgatgcacttgttgccttcatgtgcttttgaagttattgaacattcatccaatatatcatcaagtacat |
16797945 |
T |
|
| Q |
112 |
aggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtgag |
208 |
Q |
| |
|
| ||| ||||| || ||||||||||| | || |||||||| ||||||||| ||||||| ||||||||||| || |||||||| |||| |||||| |
|
|
| T |
16797946 |
aagcagcatcacccaatttctgcagccatttttgcacaacatcgcttgttatctgcttcttttcagcatcttttagtacagcacggattgtggtgag |
16798042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 52 - 208
Target Start/End: Original strand, 16988165 - 16988321
Alignment:
| Q |
52 |
tgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacataggcaacatcagtcagcttctgcagccaatctttcacaac |
151 |
Q |
| |
|
|||||||||||||||||||||| ||||||| || |||||||||||||||||||| ||||| ||| |||||| ||| ||||||||||| | ||||||||| |
|
|
| T |
16988165 |
tgttgtctccatgtgcttttgaggttattgagcattcatccaatatatcatcaagtacataagcagcatcagacagtttctgcagccattgtttcacaac |
16988264 |
T |
|
| Q |
152 |
atggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtgag |
208 |
Q |
| |
|
|| ||||||||||||||||| || |||||||| || |||||||| |||| |||||| |
|
|
| T |
16988265 |
attgcttgttatttgcttcttttgagcatcttttagtacagcacggattgtggtgag |
16988321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 16781779 - 16781963
Alignment:
| Q |
12 |
cgagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| ||||||||| |||||||||||| | ||||||| ||| || ||||||||||||||||| |||| |
|
|
| T |
16781779 |
cgagccaaaatcttcataggatggaaacgagtgatccgcttgttgtcgccatgtgcttttaaggttattgaacattcgtccaatatatcatcaagcacat |
16781878 |
T |
|
| Q |
112 |
aggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacg |
196 |
Q |
| |
|
| ||| ||||| ||| | ||| | ||| ||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
16781879 |
aagcagcatcacgcagttgctgtaaccactctttcacagcatcatttgttatttgcttcttttcagcatcttttaggacagcacg |
16781963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 18805674 - 18805589
Alignment:
| Q |
12 |
cgagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatat |
97 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18805674 |
cgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatat |
18805589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 16867489 - 16867293
Alignment:
| Q |
12 |
cgagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| || || ||||||||| ||||||| |||||||| ||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
16867489 |
cgagccaaaatcttcataggatggaaactagtgatgcacttgttgcctccatgcgcttttgaagttattgaacattcatccaatatatcatcaagtacat |
16867390 |
T |
|
| Q |
112 |
aggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtgag |
208 |
Q |
| |
|
| ||| | ||| ||| || |||||||| | ||||| || | ||||||||||||||| ||||||||||| || ||| |||| |||| |||||| |
|
|
| T |
16867389 |
aagcagcgtcacccagtttttgcagccagttcctcacaggatcgtttgttatttgcttcttttcagcatcttttagtacatcacggattgtggtgag |
16867293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 16844579 - 16844702
Alignment:
| Q |
90 |
tccaatatatcatcaagaacataggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggagga |
189 |
Q |
| |
|
||||||||||||||||||| || || ||||||| || || | ||||||| ||||||| |||| ||||| ||||||||||| |||||||||| |||| |
|
|
| T |
16844579 |
tccaatatatcatcaagaatatgtgctgcatcagtaaggttttccagccaaactttcaccgcatgacttgtgatttgcttctcctcagcatctttcagga |
16844678 |
T |
|
| Q |
190 |
cagcacgaattgcggtgagatttc |
213 |
Q |
| |
|
||||| |||| || |||||||||| |
|
|
| T |
16844679 |
cagcatgaatagcagtgagatttc |
16844702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 10036 - 10251
Alignment:
| Q |
12 |
cgagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacat |
111 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10036 |
cgagccaaaatcttcttaggatgaaaacgggtgatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacat |
10135 |
T |
|
| Q |
112 |
aggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtgagatt |
211 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
10136 |
aggcaacatcagttagcttctgcagccaatctttcacaacacggcttgttatttgcttctcttcggcatcttgaaggacagcacgaattgcggtgagatt |
10235 |
T |
|
| Q |
212 |
tccacataacttttgt |
227 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10236 |
tccacataacttttgt |
10251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 5356 - 5571
Alignment:
| Q |
12 |
cgagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacat |
111 |
Q |
| |
|
|||||||||||| || |||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5356 |
cgagccaaaatcatcttaggatggaaacgggtgatccacttgttgtctccatgtgcttttgattttattgtacaatcatccaatatatcgtcaagaacat |
5455 |
T |
|
| Q |
112 |
aggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtgagatt |
211 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5456 |
aagcaacatcagtcagcttctgcagccaatctttcacaacacggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtgagatt |
5555 |
T |
|
| Q |
212 |
tccacataacttttgt |
227 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5556 |
tccacataacttttgt |
5571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 38938840 - 38938636
Alignment:
| Q |
12 |
cgagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacat |
111 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||||||||| |||||||||||| | ||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
38938840 |
cgagccaaaatcttcagaggatggaaacgagtgatccacttgttgtcgccatgtgcttttaaggttattgaacattcatccaatatatcatcaagtacat |
38938741 |
T |
|
| Q |
112 |
aggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtgagatt |
211 |
Q |
| |
|
| ||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
38938740 |
aagcaacatcacgcaatttctgcagccagtctttcacaacatggcttgtaatttgcttctcttcagcatctttgaggacagcacgaattgcagtgagatt |
38938641 |
T |
|
| Q |
212 |
tccac |
216 |
Q |
| |
|
||||| |
|
|
| T |
38938640 |
tccac |
38938636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 7 - 219
Target Start/End: Complemental strand, 7052749 - 7052537
Alignment:
| Q |
7 |
cacgccgagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaag |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||| |||||||||||||||||| | |||||||||||||| ||| || ||||||||||||||||| |
|
|
| T |
7052749 |
cacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctccacagggttttgatgttattgaacattcgtccaatatatcatcaag |
7052650 |
T |
|
| Q |
107 |
aacataggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtg |
206 |
Q |
| |
|
||||| ||| |||||| ||||||||||||||||||||| ||| |||||||||| ||||||||| ||||||| |||| ||| | |||||||||||| ||| |
|
|
| T |
7052649 |
aacatgagcagcatcagccagcttctgcagccaatcttttacagcatggcttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtg |
7052550 |
T |
|
| Q |
207 |
agatttccacata |
219 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7052549 |
agatttccacata |
7052537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 13378771 - 13378981
Alignment:
| Q |
12 |
cgagccaaaatcttcataggatggaaacaggttatccacttgttgtc---tccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaa |
108 |
Q |
| |
|
||||||||||||||| |||||||||||| || |||||||||| ||| |||||||||||| ||| |||| | | | || || |||||||||||||||| |
|
|
| T |
13378771 |
cgagccaaaatcttcttaggatggaaacgagtgatccacttgtcgtcgtctccatgtgctttggatcttatcgaatattcgtctaatatatcatcaagaa |
13378870 |
T |
|
| Q |
109 |
cataggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtgag |
208 |
Q |
| |
|
|| || |||||||| | |||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
13378871 |
tatgcgctacatcagttaacttctgcagccaatcttttacagcatgacttgttatttgcttctcttcagcatctttgaggacagcccgaattgcagtgag |
13378970 |
T |
|
| Q |
209 |
atttccacata |
219 |
Q |
| |
|
||||||||||| |
|
|
| T |
13378971 |
atttccacata |
13378981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 9824 - 10008
Alignment:
| Q |
12 |
cgagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| ||||||||| |||||||||||| | ||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
9824 |
cgagccaaaatcttcataggatggaaacgagtgatccgcttgttgtcgccatgtgcttttaaggttattgaacattcatccaatatatcatcaagcacat |
9923 |
T |
|
| Q |
112 |
aggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacg |
196 |
Q |
| |
|
| ||| ||||| ||| | ||| ||||| ||||| ||| ||| | ||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
9924 |
aagcagcatcacgcagttgctgtagccactctttgacagcatcgtttgttatttgcttcttttcagcatcttttaggacagcacg |
10008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 9185 - 9365
Alignment:
| Q |
16 |
ccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacataggc |
115 |
Q |
| |
|
|||||||||||||||||||||||| || |||| |||||||| |||||||||||| | ||||||| ||| |||||||||||||||||||| ||||| || |
|
|
| T |
9185 |
ccaaaatcttcataggatggaaacgagtgatccgcttgttgttaccatgtgcttttaaggttattgaacattcatccaatatatcatcaagcacataagc |
9284 |
T |
|
| Q |
116 |
aacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacg |
196 |
Q |
| |
|
| ||||| ||| | ||| ||||| ||||| ||| ||| | ||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
9285 |
agcatcacgcagttgctgtagccactctttgacagcatcgtttgttatttgcttcttttcagcatcttttaggacagcacg |
9365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 13529 - 13713
Alignment:
| Q |
12 |
cgagccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| ||||||||| ||||||||| || | ||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
13529 |
cgagccaaaatcttcataggatggaaacgagtgatccgcttgttgtcgccatgtgctcttaaggttattgaacattcatccaatatatcatcaatcacat |
13628 |
T |
|
| Q |
112 |
aggcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacg |
196 |
Q |
| |
|
| ||| ||||| |||| | ||| ||||| ||||| ||| ||| | ||||||||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
13629 |
aagcagcatcaatcagttgctgtagccactctttgacagcatcgtttgttatttgcttcttttctgcatcttttaggacagcacg |
13713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 38166 - 38348
Alignment:
| Q |
14 |
agccaaaatcttcataggatggaaacaggttatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacatag |
113 |
Q |
| |
|
|||||||||||||| ||||||||||| || || ||||||| |||||| |||| |||| | ||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
38166 |
agccaaaatcttcacaggatggaaactagtgatgcacttgtcgtctccgtgtggttttaaggttattgaacattcatccaatatatcatcaagtacataa |
38265 |
T |
|
| Q |
114 |
gcaacatcagtcagcttctgcagccaatctttcacaacatggcttgttatttgcttctcttcagcatcttggaggacagcacg |
196 |
Q |
| |
|
||| |||| || | ||| ||||| |||||||| ||| | ||||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
38266 |
gcagaatcaccgagttgctgtagccactctttcacggcatcgtttgttatttgctttttttcagcatcttttaggacagcacg |
38348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University