View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19877_high_1 (Length: 473)
Name: NF19877_high_1
Description: NF19877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19877_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 7 - 403
Target Start/End: Original strand, 31782017 - 31782410
Alignment:
| Q |
7 |
ggaggagcagagagaaggagttttacctttggaacttgccgggttgcgagtgatttgtattgggaaggagttagagagtggtgactgtgaggtggtgagt |
106 |
Q |
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|||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31782017 |
ggagaagcggagagaaggagttttacctttggaacttgacgggttgcgagtgatttgtattgggaaggagttagagagtggtgactgcgaggtggtgagt |
31782116 |
T |
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| Q |
107 |
ttgaagttaaagcagattgctgccatagtggaggagtgtgtgggaccgggtgttatagtgagttttggagagttgaagtcttttgtgaacgatgatgatg |
206 |
Q |
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| T |
31782117 |
ttgaagttaaagcagattgctgccatagtggaggagtgtgtgggaccgggtgttatagtgagttttggagagttgaagtcttttgtcaacgatg---atg |
31782213 |
T |
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| Q |
207 |
gtgggtttgttgaagaattagggaaattgttgaagattcattatgataagttttggttagcgggtgcagctgatagttatgaaagttacttgaaatttct |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31782214 |
gtgggtttgttgaagaattagggaaattgttgaagattcattatgataagttttggttagcaggtgcagctgatagttatgaaagttacttgaaatttct |
31782313 |
T |
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| Q |
307 |
gggtaggtttccttctgtggagaaagattgggatttgcagattcttcctattacttctgttaaggcttctgaatcatatcagagacccaggtccagg |
403 |
Q |
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| T |
31782314 |
gggtaggtttccttctgtggagaaagattgggatttgcagattcttcctattacttctgttaaggcttctgaatcatatcagagacccaggtccagg |
31782410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 19636179 - 19635944
Alignment:
| Q |
16 |
gagagaaggagttttacctttggaacttgccgggttgcgagtgatttgtattgggaaggagttagagagtggtgactgtgaggtggtgagtttgaagtta |
115 |
Q |
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| T |
19636179 |
gagagaaggagttttacctttggaacttgccgggttgcgtgtgatttgtattgggaaggagttagagagtggtgactgcgaggtggtgagtttgaagtta |
19636080 |
T |
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| Q |
116 |
aagcagattgctgccatagtggaggagtgtgtgggaccgggtgttatagtgagttttggagagttgaagtcttttgtgaacgatgatgatggtgggtttg |
215 |
Q |
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| T |
19636079 |
aagcagattgctgccatagcggaggagtgtgtgggaccgggtgttatagtgagttttggagagttgaagtcttttgtgaacgat---gatggtgggtttg |
19635983 |
T |
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| Q |
216 |
ttgaagaattagggaaattgttgaagattcattatgata |
254 |
Q |
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| T |
19635982 |
ttgaagaattagggaaattgttgaagattcattatgata |
19635944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 277 - 403
Target Start/End: Complemental strand, 19635948 - 19635827
Alignment:
| Q |
277 |
tgatagttatgaaagttacttgaaatttctgggtaggtttccttctgtggagaaagattgggatttgcagattcttcctattacttctgttaaggcttct |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19635948 |
tgatagttatgaaagttacttgaaatttctgggtaggtttccttctgtggagaaagattgggatttgcagattcttcctatt-----tgttaaggcttct |
19635854 |
T |
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| Q |
377 |
gaatcatatcagagacccaggtccagg |
403 |
Q |
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| T |
19635853 |
gaatcatatcagagacccaggtccagg |
19635827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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