View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19877_high_11 (Length: 242)
Name: NF19877_high_11
Description: NF19877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19877_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 40029516 - 40029321
Alignment:
| Q |
9 |
agcagagacccatatttgagacaagctgaattcatcattattattattattttccacatagggtctccacacatttatggtagcctttgctccatagaac |
108 |
Q |
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| T |
40029516 |
agcagtgacccatatttgagacaagctgaattcatcattattactgttattttccacatagggtctccacacatttatggtagcctttgctccatagaac |
40029417 |
T |
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| Q |
109 |
ttatccccattcacacgtgcaattgcatactgtgcattgcggaccaacaagaagacaccccatttgttatttcattttcataaaagttggagcaaa |
204 |
Q |
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| T |
40029416 |
ttatctccattcacacgtgcaattgcatactgtgcattgcggaccaacaagaagacaccccatttgttatttcattttcgtaaaagttggagcaaa |
40029321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 30928676 - 30928704
Alignment:
| Q |
15 |
gacccatatttgagacaagctgaattcat |
43 |
Q |
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| T |
30928676 |
gacccatatttgagacaagctgaattcat |
30928704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 36692089 - 36692055
Alignment:
| Q |
79 |
acatttatggtagcctttgctccatagaacttatc |
113 |
Q |
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| T |
36692089 |
acatttatagtagcctttgctccatagaacttatc |
36692055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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