View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19877_high_2 (Length: 458)
Name: NF19877_high_2
Description: NF19877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19877_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 13 - 443
Target Start/End: Complemental strand, 33602392 - 33601962
Alignment:
| Q |
13 |
aatatttgaaatgtgaaaacacgaagtggccagttttacttcctagttcaaattagatttgtgtggtggaatcactagcgctgaagctggttctggttgg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33602392 |
aatatttgaaatgtgaaaacacgaagtggccagttttacttcctagttcaaattagatttgtgtggtggaatcactagcgctgaagctggttctggttgg |
33602293 |
T |
|
| Q |
113 |
cttgcttttagtgcaaaagattttccttattgcgattaaacctccccggttcaaattgccggttgtctgcctatcaatatccatcatcaccaatattaca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33602292 |
cttgcttttagtgcaaaagattttccttattgcgattaaacctccccggttcaaattgccggttgtctgcctatcaatatccatcatcaccaatattaca |
33602193 |
T |
|
| Q |
213 |
tgcaccaaattaaaatgattttcaacccaagcacatccaattgttgttttcattttctctattaagttatttgagatgattatatgaaaaagaagtgttc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33602192 |
tgcaccaaattaaaatgattttcaacccaagcacatccaattgttgttttcattttctctattaagttatttgagatgattatatgaaaaagaagtgttt |
33602093 |
T |
|
| Q |
313 |
catcacaaatttgctagttatatcttaaacggggataaaccaaaattacataaagtatgtcaattatagccaactacaataggactaagttggttgataa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33602092 |
catcacaaatttgctagttatatcttaaacggggataaaccaaaattacataaagtatgtcaattatagccaactacaataggactaagttggttgataa |
33601993 |
T |
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| Q |
413 |
tttatgttgggttgataacaaagggaattta |
443 |
Q |
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| T |
33601992 |
tttatgttaggttgataacaaagggaattta |
33601962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 33576310 - 33576407
Alignment:
| Q |
13 |
aatatttgaaatgtgaaaacacgaagtggccagttttacttcctagttcaaattagatttgtgtggtggaatcactagcgctgaagctggttctggtt |
110 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||| ||| ||||| |
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| T |
33576310 |
aatatttgaaatgtgaaaacacgaagtggtcagttttacttcctagttcacattggatttgtgtggtggactcactagcgttgaagctagttatggtt |
33576407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 10517331 - 10517238
Alignment:
| Q |
36 |
aagtggccagttttacttcctagttcaaattagatttgtgtggtggaatcactagcgctgaagctggttctggttggcttgcttttagtgcaaaa |
130 |
Q |
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| T |
10517331 |
aagtggtcagttttacttcctagttcacattggatttgtgatgtg-aattaccagcgttgaagctggttctggttggcttgctattagtgcaaaa |
10517238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 9080375 - 9080489
Alignment:
| Q |
79 |
tggaatcactagcgctgaagctggttctggttggcttgcttttagtgcaaaagattttccttattgcgattaaacctccccggttcaaattgccggttgt |
178 |
Q |
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|||||| ||||| | ||||||||||| | ||||| | ||||||| ||||||| |||||||| ||| || | |||||||| |||| | ||||| ||||| |
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| T |
9080375 |
tggaattactagagttgaagctggttatctttggcgttcttttagcgcaaaaggttttccttgttgggaatcaacctccctagttctagttgccagttgt |
9080474 |
T |
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| Q |
179 |
ctgcctatcaatatc |
193 |
Q |
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| T |
9080475 |
ttgcctatcaatatc |
9080489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 24049423 - 24049468
Alignment:
| Q |
378 |
atagccaactacaataggactaagttggttgataatttatgttggg |
423 |
Q |
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||||||||||||| || ||||| |||||||| |||||||||||||| |
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| T |
24049423 |
atagccaactacattatgactacgttggttggtaatttatgttggg |
24049468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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