View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19877_high_3 (Length: 435)
Name: NF19877_high_3
Description: NF19877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19877_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 33330215 - 33330633
Alignment:
| Q |
17 |
agaaaggtgagaaaggattgatttgatgagagaagcagagagaactgattgattttgatttggccgtgcattgtttttcatggtccgttatatacgtcaa |
116 |
Q |
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| T |
33330215 |
agaaaggtgagaaaggattgatttgatgagagaagtagagaga-ctgattgattttgatttggccatgcattgtttttcatggtccgttatatacgtcaa |
33330313 |
T |
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| Q |
117 |
gatgggaaaatgtgtgggccaggaaaacatggtgtcctacttgctatggctccttccatcttatcaaacttttcacacacattttatgcatatatgttcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33330314 |
gatgggaaaatgtgtgggccaggaaaacatggtgtcctacttcgtatggctccttccatcttatcaaacttttcacacacattttatgcatatatgttcc |
33330413 |
T |
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| Q |
217 |
atagaatagaatactttaccctattctttttatttcaagtgaaccatgataagatcttttcttc-nnnnnnnnacgagggtgtggaaataaaaatggatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
33330414 |
atagaatagaatactttaccctattctttttatttcaagtgaaccatgataagatcttttcttctttttttttatgagggtgtggaaataaaaatggatt |
33330513 |
T |
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| Q |
316 |
cctttcaatcctgatatcttgcacttacgcattcaacacattggtaattgttgaatcaagatcgaacggttgagaaatcacgcatattttgattatttat |
415 |
Q |
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||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
33330514 |
cctttcaattcagatatcttgcatttacgcattcaacacattggtaattgttgaatcaagatcgaacggttgagaaatcacgtagattttgattatttat |
33330613 |
T |
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| Q |
416 |
aatatccaaaatatcaaaaa |
435 |
Q |
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| T |
33330614 |
aatatccaaaataccaaaaa |
33330633 |
T |
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