View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19877_high_9 (Length: 252)

Name: NF19877_high_9
Description: NF19877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19877_high_9
NF19877_high_9
[»] chr1 (4 HSPs)
chr1 (41-252)||(33330614-33330828)
chr1 (60-132)||(48680609-48680681)
chr1 (51-96)||(17874734-17874779)
chr1 (55-95)||(572334-572374)
[»] chr4 (1 HSPs)
chr4 (44-139)||(43874872-43874967)
[»] chr3 (4 HSPs)
chr3 (74-133)||(20610001-20610060)
chr3 (57-139)||(34153797-34153879)
chr3 (59-139)||(2983639-2983718)
chr3 (57-113)||(22934979-22935035)
[»] chr6 (1 HSPs)
chr6 (41-133)||(4231741-4231833)
[»] chr5 (1 HSPs)
chr5 (55-106)||(19519120-19519171)
[»] chr7 (2 HSPs)
chr7 (74-127)||(14088691-14088744)
chr7 (74-127)||(14398709-14398762)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 41 - 252
Target Start/End: Complemental strand, 33330828 - 33330614
Alignment:
Q  41 aagtggattgatgggttattgggttgggtctagtataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtgtctccgtcactgg 140  Q
    ||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||  |||||    
T  33330828 aagtggattgatatattattgggttgggtctagtataaagaaagtatcgattgagctcgggcgagtacccggggtcgtcgggtggtgtctccgctactgg 33330729  T
Q  141 tgctaaccctccacttatttccacactggtttggattcc---atgtcgaaatatcttgttaacatattgaaagtcattggatcaaatagtccaaattttt 237  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33330728 tgctaaccctccacttatttccacactggtttggattccttgatgtcgaaatatcttgttaacatattgaaagtcattggatcaaatagtccaaattttt 33330629  T
Q  238 gatattttggatatt 252  Q
    | |||||||||||||    
T  33330628 ggtattttggatatt 33330614  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 48680609 - 48680681
Alignment:
Q  60 tgggttgggtctagtataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtgtctcc 132  Q
    |||||||||  ||||||||||||||||| ||||||| ||||||||||| ||| | ||| | ||||||||||||    
T  48680609 tgggttgggcttagtataaagaaagtatcgattgagttcgggcgagtatccgaggtcgccaggtggtgtctcc 48680681  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 17874779 - 17874734
Alignment:
Q  51 atgggttattgggttgggtctagtataaagaaagtattgattgagc 96  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||    
T  17874779 atgggctattgggttggacctagtataaagaaagtattgattgagc 17874734  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 572334 - 572374
Alignment:
Q  55 gttattgggttgggtctagtataaagaaagtattgattgag 95  Q
    |||||||||||||  |||||||||||||||||| |||||||    
T  572334 gttattgggttggacctagtataaagaaagtatcgattgag 572374  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 139
Target Start/End: Original strand, 43874872 - 43874967
Alignment:
Q  44 tggattgatgggttattgggttgggtctagtataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtgtctccgtcactg 139  Q
    |||||| ||| | |||||||||||  |||| ||||||||| |||  |||||||||||||||||||||||| ||| ||| |||||||||||||||||    
T  43874872 tggattaatgagctattgggttggacctagaataaagaaaatatcaattgagctcgggcgagtacccggggtcgccggatggtgtctccgtcactg 43874967  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 20610060 - 20610001
Alignment:
Q  74 tataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtgtctccg 133  Q
    |||||||||||||| |||| ||||||||||||| |||||| ||||||||||||| |||||    
T  20610060 tataaagaaagtatcgattaagctcgggcgagtgcccggggtcgtcgggtggtggctccg 20610001  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 34153797 - 34153879
Alignment:
Q  57 tattgggttgggtctagtataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtgtctccgtcactg 139  Q
    |||||||||||| ||||| |||||||| ||| |||||||| ||| ||||| ||||||  ||||| |||||||||||| |||||    
T  34153797 tattgggttgggcctagtgtaaagaaaatatcgattgagcccggacgagtgcccggggccgtcgagtggtgtctccgccactg 34153879  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 2983639 - 2983718
Alignment:
Q  59 ttgggttgggtctagtataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtgtctccgtcactg 139  Q
    |||||||||| |||||||||||||| ||| |||||||| ||||| |   |||||| ||| ||||||||||||| |||||||    
T  2983639 ttgggttggg-ctagtataaagaaaatatcgattgagcccgggcaaaatcccggggtcgccgggtggtgtctctgtcactg 2983718  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 22934979 - 22935035
Alignment:
Q  57 tattgggttgggtctagtataaagaaagtattgattgagctcgggcgagtacccggg 113  Q
    |||| ||||||  |||||||||||||||||| |||||||| ||| ||||| ||||||    
T  22934979 tattaggttggacctagtataaagaaagtatcgattgagcccggacgagtgcccggg 22935035  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 4231741 - 4231833
Alignment:
Q  41 aagtggattgatgggttattgggttgggtctagtataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtgtctccg 133  Q
    ||||||||| ||||  |||| ||||||| | | |||||||||||||| ||||||| |||||||||| || | | ||| ||||||||| |||||    
T  4231741 aagtggattaatggactatttggttgggccaaatataaagaaagtatcgattgagttcgggcgagtgccggaggtcgccgggtggtggctccg 4231833  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 19519120 - 19519171
Alignment:
Q  55 gttattgggttgggtctagtataaagaaagtattgattgagctcgggcgagt 106  Q
    |||||||||||||  |||||||||||||||||| |||||||| ||| |||||    
T  19519120 gttattgggttggacctagtataaagaaagtatcgattgagcccggacgagt 19519171  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 14088744 - 14088691
Alignment:
Q  74 tataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtg 127  Q
    |||||||||||||| |||||||| ||||| ||| |||||| ||| |||||||||    
T  14088744 tataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtg 14088691  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 14398762 - 14398709
Alignment:
Q  74 tataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtg 127  Q
    |||||||||||||| |||||||| ||||| ||| |||||| ||| |||||||||    
T  14398762 tataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtg 14398709  T

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